Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   J7U24_RS08045 Genome accession   NZ_CP072440
Coordinates   1538594..1539670 (-) Length   358 a.a.
NCBI ID   WP_011681549.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1533594..1544670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS08025 (J7U24_08000) - 1534706..1536772 (-) 2067 WP_138496610.1 sodium:proton antiporter -
  J7U24_RS08030 (J7U24_08005) - 1536781..1537023 (-) 243 WP_084830769.1 hypothetical protein -
  J7U24_RS08035 (J7U24_08010) - 1537020..1537568 (-) 549 WP_011226462.1 class I SAM-dependent methyltransferase -
  J7U24_RS08040 (J7U24_08015) - 1537565..1538509 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  J7U24_RS08045 (J7U24_08020) sepM 1538594..1539670 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  J7U24_RS08050 (J7U24_08025) coaD 1539648..1540145 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  J7U24_RS08055 (J7U24_08030) rsmD 1540179..1540778 (-) 600 Protein_1547 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J7U24_RS08060 (J7U24_08035) trxB 1540869..1541822 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  J7U24_RS08065 (J7U24_08040) - 1541855..1542079 (-) 225 WP_014621911.1 DUF4059 family protein -
  J7U24_RS08070 (J7U24_08045) - 1542294..1543037 (-) 744 WP_014608652.1 amino acid ABC transporter ATP-binding protein -
  J7U24_RS08075 (J7U24_08050) - 1543037..1543783 (-) 747 WP_100284797.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39172.02 Da        Isoelectric Point: 9.3888

>NTDB_id=553238 J7U24_RS08045 WP_011681549.1 1538594..1539670(-) (sepM) [Streptococcus thermophilus strain S24730]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGNTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=553238 J7U24_RS08045 WP_011681549.1 1538594..1539670(-) (sepM) [Streptococcus thermophilus strain S24730]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAATACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains


Predicted by InterProScan.

(137-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

62.757

95.251

0.598