Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U24_RS02215 Genome accession   NZ_CP072440
Coordinates   412230..412673 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 407230..417673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS02195 (J7U24_02185) - 407754..408506 (-) 753 WP_011680801.1 NUDIX hydrolase -
  J7U24_RS02200 (J7U24_02190) - 408570..409676 (-) 1107 WP_014608024.1 AAA family ATPase -
  J7U24_RS02205 (J7U24_02195) gdhA 410020..411372 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U24_RS02210 (J7U24_02200) - 411630..412040 (+) 411 WP_011680804.1 peptide deformylase -
  J7U24_RS02215 (J7U24_02205) rcrR 412230..412673 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U24_RS02220 (J7U24_02210) rcrP 412677..414491 (+) 1815 WP_232987102.1 ABC transporter ATP-binding protein Regulator
  J7U24_RS02225 (J7U24_02215) rcrQ 414481..416259 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  J7U24_RS02230 (J7U24_02220) - 416415..416786 (+) 372 WP_232981380.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=553208 J7U24_RS02215 WP_002945408.1 412230..412673(+) (rcrR) [Streptococcus thermophilus strain S24730]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=553208 J7U24_RS02215 WP_002945408.1 412230..412673(+) (rcrR) [Streptococcus thermophilus strain S24730]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537