Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   LXE94_RS17480 Genome accession   NZ_CP090125
Coordinates   3261990..3264314 (-) Length   774 a.a.
NCBI ID   WP_257986205.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3256990..3269314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS17470 (LXE94_17430) cysI 3258261..3259976 (-) 1716 WP_017696388.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  LXE94_RS17475 (LXE94_17435) cysJ 3260002..3261819 (-) 1818 WP_257986204.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  LXE94_RS17480 (LXE94_17440) helD 3261990..3264314 (-) 2325 WP_257986205.1 DNA helicase IV Machinery gene
  LXE94_RS17485 (LXE94_17445) yvgT 3264508..3265116 (-) 609 WP_003219999.1 trimeric intracellular cation channel family protein -
  LXE94_RS17490 (LXE94_17450) bdbC 3265303..3265719 (-) 417 WP_003228417.1 disulfide oxidoreductase -
  LXE94_RS17495 (LXE94_17455) bdbD 3265724..3266392 (-) 669 WP_257986206.1 disulfide bond formation protein BdbD -
  LXE94_RS17500 (LXE94_17460) cadA 3266512..3268620 (-) 2109 WP_257986207.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 90048.64 Da        Isoelectric Point: 6.1782

>NTDB_id=553205 LXE94_RS17480 WP_257986205.1 3261990..3264314(-) (helD) [Bacillus subtilis strain Bs96]
MNQQDKEWKEEQSRIDEVLKELEKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHEAIETMASIKQQAELLSDREQ
NHRRMDQQLKRIQQLKKSPYFGRIDFIENGEEQAERIYIGLASCLDEKEEHFLIYDWRAPISSLYYNYSPGKAEYEVPGE
TIEGEMVLKRQFMIKNGTLKAMFNTDMTIGDEMLQEVLSHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKT
SAALQRVAYLLYRHRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHRLGRRFQCESPFDQLEYCLTE
TQEGDFPTRLAGITWKAGLSFQQFIDEYVIWLSSEGMIFKNIIFRGQKLITKEHIQSYFYSLDQNHSIPNRMEQTAKWLL
SELNKLEKKERRKDWVVHEAELLDKEDYLDVYKKLQERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVRLLAFLDV
PQMYLQLFSGWGGKFQHEKMAAIGELTRSAFAENKLLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQDYSPFQMAYMR
SIFPAASMTVLGDINQFIYAHTVQGDQRMDASFEDEPAEYVRLKRTYRSTRQIVEFTKAMLQDGEDIEPFNRSGEMPLVV
KTEGHESLCQKLAQEIGRLKKKGHETIAVICKTAQQCIQAHAHMSEYTDVRLIHKENQPFQKGVCVIPVYLAKGIEFDAV
LVYDASEEHYHTEHDRRLLYTACTRAMHMLAVFYTGAASPFVTAVPPHLYQIAE

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=553205 LXE94_RS17480 WP_257986205.1 3261990..3264314(-) (helD) [Bacillus subtilis strain Bs96]
ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCGAGAATAGATGAGGTGCTGAAGGAGCTCGAAAAAAAAGAGCG
GTTTCTGGAAACGTCTGCGGGCGGGTTGAAGCATGATATCATCGGATTAAGAAAAAGCTTTTGGGAGGATGTTAAGGTTA
ATTTTGATGATGCCCATGAAGCGATTGAAACGATGGCAAGCATTAAGCAGCAGGCAGAGCTGCTGTCTGATCGGGAACAG
AATCATCGGCGCATGGATCAGCAGCTCAAACGAATTCAACAATTAAAAAAATCGCCTTATTTCGGCCGGATTGATTTTAT
TGAGAACGGCGAGGAGCAGGCAGAGCGAATTTATATCGGTTTAGCTTCCTGTTTGGATGAGAAGGAGGAACACTTTCTGA
TCTATGACTGGAGGGCGCCGATATCAAGTTTGTACTACAATTATTCCCCAGGAAAAGCGGAGTACGAGGTGCCCGGTGAA
ACGATAGAAGGGGAAATGGTGCTGAAACGCCAGTTTATGATCAAAAACGGCACTCTCAAGGCGATGTTTAATACCGATAT
GACGATTGGCGATGAAATGCTGCAAGAGGTATTAAGCCACCATTCCGATACCCAAATGAAAAACATCGTGTCTACGATTC
AGAAAGAACAAAATCAGATTATCCGTAATGAAAAAAGCAAAATCCTGATCGTGCAGGGAGCGGCTGGCAGCGGGAAAACA
TCGGCTGCGCTTCAGCGTGTCGCTTATTTGTTATACAGGCACCGCGGCGTCATTGATGCCGGACAAATCGTTTTGTTTTC
TCCCAACTTCTTATTTAACAGCTATGTCTCCTCTGTTTTGCCGGAGTTAGGAGAAGAGAATATGGAACAGGCGACGTTTC
AGGAATATATCGAGCATCGTCTTGGCCGCAGGTTTCAATGTGAAAGCCCCTTTGACCAGCTTGAATATTGCCTGACTGAA
ACACAGGAAGGCGATTTTCCAACAAGGCTTGCCGGAATCACATGGAAGGCGGGTTTATCTTTTCAGCAATTCATTGATGA
ATACGTCATATGGCTTTCCTCTGAAGGGATGATTTTTAAAAATATCATATTCCGCGGACAAAAGCTGATCACAAAGGAAC
ACATTCAATCCTATTTTTACTCATTGGATCAAAATCACTCCATTCCGAACCGGATGGAGCAAACCGCGAAGTGGCTGCTG
AGTGAGCTTAACAAGCTTGAGAAAAAGGAACGGCGAAAGGATTGGGTCGTTCATGAAGCTGAGCTGCTCGACAAAGAGGA
CTACTTGGACGTGTATAAGAAACTGCAGGAAAGGAAACGGTTCAGCGAGAGTACGTTTAACGATTATCAAAGAGAGCAGC
AGCTGCTTGCCGCCATCATTGTGAAAAAAGCCTTCAAACCGCTCAAACAAGCGGTCAGGCTCCTTGCATTTCTTGATGTT
CCACAGATGTATTTGCAATTGTTTTCTGGCTGGGGAGGAAAATTTCAGCATGAGAAGATGGCGGCAATAGGAGAGCTGAC
CCGATCGGCATTTGCAGAAAATAAATTGCTCTATGAGGACGCAGCACCGTTTCTTTATATGCAGGATCTGATTGAGGGCA
GAAAGAAAAATACGAAGATCAAACATCTATTTATTGACGAAGCCCAAGACTATTCACCGTTTCAGATGGCTTACATGAGA
AGCATTTTTCCGGCTGCCAGCATGACAGTGCTCGGTGATATCAATCAGTTCATCTACGCGCATACCGTACAAGGGGATCA
GCGTATGGATGCGAGCTTTGAGGATGAGCCTGCTGAGTATGTTCGTTTAAAGAGAACATACAGATCAACAAGGCAGATTG
TCGAATTTACCAAAGCGATGCTTCAAGATGGAGAGGATATTGAGCCGTTTAATAGAAGCGGGGAAATGCCGCTCGTTGTC
AAAACTGAAGGACATGAGAGCCTTTGCCAAAAGCTCGCGCAAGAAATTGGACGGCTCAAGAAAAAAGGGCACGAAACAAT
AGCCGTCATCTGCAAGACTGCGCAACAATGCATACAGGCGCACGCCCACATGAGTGAATATACAGATGTTCGCCTAATTC
ATAAAGAAAATCAACCATTCCAAAAGGGTGTTTGCGTGATTCCGGTGTATTTAGCGAAGGGAATTGAATTTGACGCAGTG
CTTGTCTATGATGCATCTGAAGAACACTATCATACAGAGCACGACCGCAGGCTTTTATATACTGCGTGCACCCGTGCGAT
GCACATGCTGGCGGTATTTTATACAGGTGCAGCCAGTCCGTTTGTAACCGCTGTGCCGCCTCACTTATATCAGATTGCTG
AATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-751)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

97.158

100

0.972