Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TVNIR_RS12230 Genome accession   NC_019902
Coordinates   2678403..2679611 (+) Length   402 a.a.
NCBI ID   WP_015259341.1    Uniprot ID   L0DZ39
Organism   Thioalkalivibrio nitratireducens DSM 14787     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673403..2684611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVNIR_RS12190 (TVNIR_2586) nusG 2673797..2674330 (-) 534 WP_015259338.1 transcription termination/antitermination protein NusG -
  TVNIR_RS12195 (TVNIR_2587) secE 2674350..2674718 (-) 369 WP_015259339.1 preprotein translocase subunit SecE -
  TVNIR_RS12205 tuf 2674909..2676099 (-) 1191 WP_015259329.1 elongation factor Tu -
  TVNIR_RS12225 (TVNIR_2588) pilB 2676683..2678395 (+) 1713 WP_015259340.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TVNIR_RS12230 (TVNIR_2589) pilC 2678403..2679611 (+) 1209 WP_015259341.1 type II secretion system F family protein Machinery gene
  TVNIR_RS12235 (TVNIR_2590) pilD 2679670..2680524 (+) 855 WP_015259342.1 prepilin peptidase Machinery gene
  TVNIR_RS12240 (TVNIR_2591) coaE 2680521..2681153 (+) 633 WP_015259343.1 dephospho-CoA kinase -
  TVNIR_RS12245 (TVNIR_2592) zapD 2681211..2682023 (+) 813 WP_043739694.1 cell division protein ZapD -
  TVNIR_RS12250 (TVNIR_2593) - 2682065..2683006 (-) 942 WP_418081360.1 Nudix family hydrolase -
  TVNIR_RS12255 (TVNIR_2594) argJ 2683014..2684225 (-) 1212 WP_015259346.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44092.01 Da        Isoelectric Point: 9.6092

>NTDB_id=55319 TVNIR_RS12230 WP_015259341.1 2678403..2679611(+) (pilC) [Thioalkalivibrio nitratireducens DSM 14787]
MAETETIYIWEGLNKKGTRVKGETPADSEMLARAELRRNGINVLKIRKKPKSLFSTKKRIKPVDIAYFLRQMTTMLSSGV
PLVQAFDIVGRGHENPTMATLIMDLKSSVEGGETFAAALAKHPRHFDDLVINLVEAGEQSGTLETLLDKVATYKEKTESL
KAKIKKAMFYPAAVIVVAIVVTAILLIFVVPQFEALFVGFGADLPAFTRMVVNLSELVQAWWWAILAAMIALGLVFIQLR
RRSPRFSRFVDLAVLRIPAIGPILRKAAVARFARTLSTMFAAGVPLVEALRSVAGATGNALYAEATERMREETAAGAQLQ
WSMRNTNVFPNMVVQMVAIGEESGSLDSMLAKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLIGGLVIAMYLPIFMLGQ
VI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=55319 TVNIR_RS12230 WP_015259341.1 2678403..2679611(+) (pilC) [Thioalkalivibrio nitratireducens DSM 14787]
ATGGCAGAGACCGAGACCATCTATATCTGGGAGGGTCTGAACAAAAAGGGGACTCGCGTAAAGGGCGAGACCCCGGCCGA
CAGCGAGATGCTCGCGCGCGCCGAGCTGCGCCGCAACGGGATCAACGTCCTGAAGATCCGCAAGAAACCGAAGTCCCTGT
TTTCGACAAAGAAACGGATCAAACCGGTCGACATCGCCTATTTCCTGCGCCAGATGACGACGATGCTCAGTTCCGGCGTG
CCGCTGGTGCAGGCCTTCGACATCGTCGGGCGGGGGCACGAAAACCCGACGATGGCCACGCTGATCATGGACCTGAAGTC
CTCGGTCGAAGGCGGCGAGACCTTCGCGGCAGCACTGGCCAAGCATCCGAGACACTTCGACGACCTGGTGATCAATCTGG
TCGAGGCCGGCGAGCAGTCGGGGACGCTGGAGACCTTGCTCGACAAGGTCGCCACCTACAAGGAGAAGACGGAAAGCCTC
AAGGCCAAGATCAAGAAGGCGATGTTCTACCCGGCCGCGGTGATCGTGGTTGCGATCGTCGTGACCGCGATCCTGCTGAT
CTTCGTGGTGCCCCAGTTCGAGGCGCTGTTCGTCGGCTTCGGCGCGGACCTGCCGGCGTTCACCCGCATGGTCGTGAACC
TCTCGGAACTCGTGCAGGCGTGGTGGTGGGCCATACTCGCGGCAATGATCGCACTCGGCCTTGTCTTCATTCAGTTGCGG
CGGCGATCGCCCCGGTTCAGCCGCTTCGTCGACCTCGCGGTGCTGCGGATACCTGCGATCGGGCCGATCCTGCGCAAGGC
GGCGGTGGCGCGGTTCGCCCGGACGCTGTCGACGATGTTCGCGGCGGGCGTGCCGCTGGTCGAGGCGCTTCGCTCGGTCG
CCGGAGCGACCGGCAACGCCCTTTACGCCGAGGCCACCGAACGGATGCGCGAGGAGACCGCGGCCGGGGCCCAGCTGCAA
TGGTCGATGCGCAATACCAACGTGTTCCCGAACATGGTCGTGCAGATGGTCGCAATCGGCGAGGAATCGGGCTCGCTCGA
CTCGATGCTCGCCAAAGTCGCCGACTTCTACGAGGAGGAAGTCGACAACGCAGTGGACAGCCTCTCCAGCCTGCTCGAGC
CGCTGATCATGGTCGTGCTCGGGGTGCTGATCGGCGGCCTGGTCATCGCGATGTACCTGCCGATCTTCATGCTGGGCCAG
GTGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0DZ39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.548

99.005

0.59
  pilC Legionella pneumophila strain ERS1305867

58.081

98.507

0.572
  pilC Acinetobacter baylyi ADP1

55.779

99.005

0.552
  pilC Acinetobacter baumannii D1279779

55.919

98.756

0.552
  pilG Neisseria meningitidis 44/76-A

46.173

100

0.465
  pilG Neisseria gonorrhoeae MS11

46.173

100

0.465
  pilC Vibrio cholerae strain A1552

43.961

100

0.453
  pilC Vibrio campbellii strain DS40M4

45.592

98.756

0.45
  pilC Thermus thermophilus HB27

39.196

99.005

0.388

Multiple sequence alignment