Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LXE94_RS10320 Genome accession   NZ_CP090125
Coordinates   1969868..1970998 (+) Length   376 a.a.
NCBI ID   WP_257986672.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964868..1975998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS10285 (LXE94_10260) - 1965681..1965907 (-) 227 Protein_1974 helix-turn-helix domain-containing protein -
  LXE94_RS10290 (LXE94_10265) - 1965999..1966436 (-) 438 WP_046160477.1 hypothetical protein -
  LXE94_RS10295 (LXE94_10270) - 1966527..1966943 (-) 417 WP_257986670.1 UPF0715 family protein -
  LXE94_RS10300 (LXE94_10275) - 1967317..1967682 (+) 366 WP_029318057.1 hypothetical protein -
  LXE94_RS10305 (LXE94_10280) - 1967863..1968157 (+) 295 Protein_1978 SOS response-associated peptidase family protein -
  LXE94_RS10310 (LXE94_10285) - 1968416..1968790 (+) 375 WP_257986671.1 YoqO family protein -
  LXE94_RS21565 (LXE94_10290) - 1969657..1969734 (+) 78 WP_227057947.1 phage holin -
  LXE94_RS10320 (LXE94_10295) rapC 1969868..1970998 (+) 1131 WP_257986672.1 tetratricopeptide repeat protein Regulator
  LXE94_RS10325 (LXE94_10300) - 1970988..1971131 (+) 144 WP_153801665.1 hypothetical protein -
  LXE94_RS10330 (LXE94_10305) - 1971285..1971485 (-) 201 WP_021481449.1 hypothetical protein -
  LXE94_RS10335 (LXE94_10310) - 1971708..1972187 (-) 480 WP_250614804.1 DNA polymerase -
  LXE94_RS10340 (LXE94_10315) - 1972204..1972533 (-) 330 WP_250614805.1 hypothetical protein -
  LXE94_RS10345 (LXE94_10320) - 1972589..1972945 (-) 357 WP_306816895.1 hypothetical protein -
  LXE94_RS10350 (LXE94_10325) - 1972938..1973230 (-) 293 Protein_1987 YolD-like family protein -
  LXE94_RS10355 (LXE94_10330) - 1973394..1973685 (+) 292 Protein_1988 hypothetical protein -
  LXE94_RS10360 (LXE94_10335) - 1973751..1974998 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  LXE94_RS10365 (LXE94_10340) - 1975102..1975461 (-) 360 WP_043857661.1 hypothetical protein -
  LXE94_RS10370 (LXE94_10345) - 1975721..1975804 (+) 84 WP_134819451.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=553158 LXE94_RS10320 WP_257986672.1 1969868..1970998(+) (rapC) [Bacillus subtilis strain Bs96]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLEDNVMYPDLEKLALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=553158 LXE94_RS10320 WP_257986672.1 1969868..1970998(+) (rapC) [Bacillus subtilis strain Bs96]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTGAAGATAATGTAATGTATCCAGATTTAGAGAAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457