Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LXE94_RS09240 Genome accession   NZ_CP090125
Coordinates   1772167..1772598 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain Bs96     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767167..1777598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS09220 (LXE94_09200) spoVS 1767729..1767989 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LXE94_RS09225 (LXE94_09205) tdh 1768254..1769297 (+) 1044 WP_257986623.1 L-threonine 3-dehydrogenase -
  LXE94_RS09230 (LXE94_09210) kbl 1769310..1770488 (+) 1179 WP_017694901.1 glycine C-acetyltransferase -
  LXE94_RS09235 (LXE94_09215) miaB 1770636..1772165 (+) 1530 WP_095843713.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LXE94_RS09240 (LXE94_09220) ymcA 1772167..1772598 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  LXE94_RS09245 (LXE94_09225) cotE 1772860..1773405 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  LXE94_RS09250 (LXE94_09230) hexA 1773538..1776114 (+) 2577 WP_041336021.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=553153 LXE94_RS09240 WP_003231834.1 1772167..1772598(+) (ymcA) [Bacillus subtilis strain Bs96]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=553153 LXE94_RS09240 WP_003231834.1 1772167..1772598(+) (ymcA) [Bacillus subtilis strain Bs96]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1