Detailed information NTG0553090

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LXE94_RS01805
• Genome accession: NZ_CP090125
• Coordinates: 330585..331706 (+)
• Length: 373 a.a.
• NCBI ID: WP_041335266.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain Bs96
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 325585..336706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXE94_RS01780 (LXE94_01775)	ycdA	325591..326655 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
LXE94_RS01785 (LXE94_01780)	-	326678..326809 (-)	132	WP_003246334.1	hypothetical protein	-
LXE94_RS01790 (LXE94_01785)	ycdB	326983..328404 (+)	1422	WP_257986402.1	YcdB/YcdC domain-containing protein	-
LXE94_RS01795 (LXE94_01790)	ycdC	328591..329952 (+)	1362	WP_257986403.1	DUF4901 domain-containing protein	-
LXE94_RS01800 (LXE94_01795)	cwlK	329959..330462 (-)	504	WP_017695036.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
LXE94_RS01805 (LXE94_01800)	rapF	330585..331706 (+)	1122	WP_041335266.1	response regulator aspartate phosphatase RapJ	Regulator
LXE94_RS01810 (LXE94_01805)	ycdF	331813..332589 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
LXE94_RS01815 (LXE94_01810)	ycdG	332614..334299 (+)	1686	WP_257986404.1	alpha-glucosidase	-
LXE94_RS01820 (LXE94_01815)	znuA	334487..335446 (+)	960	WP_257986405.1	metal ABC transporter substrate-binding protein	-
LXE94_RS01825 (LXE94_01820)	znuC	335501..336196 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44442.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=553090 LXE94_RS01805 WP_041335266.1 330585..331706(+) (rapF) [Bacillus subtilis strain Bs96]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLYSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLLNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=553090 LXE94_RS01805 WP_041335266.1 330585..331706(+) (rapF) [Bacillus subtilis strain Bs96]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTATTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTACAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATTGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCAAGGCAGCTTCTTGCCGACGCCGAAGATCTGTTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGCTGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405