Detailed information NTG0055308

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: TVNIR_RS00985
• Genome accession: NC_019902
• Coordinates: 200225..201202 (-)
• Length: 325 a.a.
• NCBI ID: WP_043739003.1
• Uniprot ID: -
• Organism: Thioalkalivibrio nitratireducens DSM 14787
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 195225..206202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TVNIR_RS00950 (TVNIR_0200)	ccoS	195718..195939 (+)	222	WP_015257067.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
TVNIR_RS00955 (TVNIR_0201)	-	196134..196667 (-)	534	WP_237251697.1	hypothetical protein	-
TVNIR_RS00960 (TVNIR_0203)	-	196616..196939 (-)	324	WP_015257070.1	hypothetical protein	-
TVNIR_RS00965 (TVNIR_0204)	-	197133..197522 (+)	390	WP_015257071.1	hypothetical protein	-
TVNIR_RS00970 (TVNIR_0205)	rpoH	197577..198440 (-)	864	WP_015257072.1	RNA polymerase sigma factor RpoH	-
TVNIR_RS00975 (TVNIR_0206)	-	198600..199526 (-)	927	WP_015257073.1	cell division protein FtsX	-
TVNIR_RS00980 (TVNIR_0207)	ftsE	199523..200206 (-)	684	WP_015257074.1	cell division ATP-binding protein FtsE	-
TVNIR_RS00985 (TVNIR_0208)	pilA	200225..201202 (-)	978	WP_043739003.1	signal recognition particle-docking protein FtsY	Machinery gene
TVNIR_RS00990 (TVNIR_0209)	-	201255..202598 (+)	1344	WP_015257076.1	M16 family metallopeptidase	-
TVNIR_RS00995 (TVNIR_0210)	-	202595..203944 (+)	1350	WP_015257077.1	M16 family metallopeptidase	-
TVNIR_RS01000 (TVNIR_0211)	rsmD	204088..204591 (+)	504	WP_015257078.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
TVNIR_RS01005 (TVNIR_0212)	-	204815..205315 (+)	501	WP_015257079.1	hypothetical protein	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 35293.55 Da
• Isoelectric Point: 7.0010

>NTDB_id=55308 TVNIR_RS00985 WP_043739003.1 200225..201202(-) (pilA) [Thioalkalivibrio nitratireducens DSM 14787]
MFGFRKKDPAPPADAPSRAGLFDRLRKGLAKTGRVLNTDIGELFRRKIDDSLFEELEERLLLADVGVDATQRIMDRITRA
VKRGELKDGDALLQALEQAMTEILEPVQKPLRIEPPPGKPFSILVVGINGAGKTTTIGKLAHHLQADGFSVLLAAGDTFR
AAAVEQLQTWGERNRVPVIAQGTGADSASVVFDALQAAQSRRIEVMIADTAGRLHTQHNLMDEIRKVRRVMGRLDPDAPN
EVLMVVDGGTGQNAINQVRQFHEALGVTGLVVTKLDGTAKGGVLFALAEQMGIPVRFIGVGEKAEDLQLFDARAFVRALL
NRGDD

Nucleotide

• Length: 978 bp

>NTDB_id=55308 TVNIR_RS00985 WP_043739003.1 200225..201202(-) (pilA) [Thioalkalivibrio nitratireducens DSM 14787]
ATGTTCGGTTTCCGAAAAAAAGACCCTGCCCCACCGGCGGACGCCCCGAGCCGCGCCGGCCTGTTCGATCGCCTGCGCAA
GGGTCTCGCGAAGACCGGCCGGGTCCTGAACACCGATATCGGCGAACTGTTCCGCCGCAAGATCGACGACAGCCTGTTCG
AGGAACTCGAGGAGCGGCTGCTGCTCGCGGACGTCGGCGTCGACGCGACCCAGCGCATCATGGACCGGATCACGCGCGCA
GTGAAGCGCGGCGAACTCAAGGACGGCGATGCGCTGCTGCAGGCGCTGGAACAGGCGATGACCGAGATTCTGGAGCCGGT
CCAGAAACCGCTGCGCATCGAGCCCCCCCCGGGGAAGCCGTTCTCGATCCTGGTCGTCGGCATCAACGGCGCCGGCAAGA
CCACGACCATCGGCAAGCTGGCCCATCACCTGCAGGCCGACGGCTTTTCCGTGCTGCTGGCCGCCGGCGACACCTTCCGC
GCGGCTGCGGTGGAACAACTGCAGACCTGGGGCGAGCGCAACCGGGTGCCAGTGATCGCGCAGGGCACCGGGGCCGATTC
CGCGTCGGTCGTCTTCGACGCGCTGCAGGCCGCCCAGTCCCGCCGCATCGAGGTGATGATCGCCGACACCGCCGGGCGCC
TGCACACCCAGCACAACCTGATGGACGAAATCCGCAAGGTGCGCCGGGTGATGGGCCGGCTCGACCCGGACGCGCCGAAC
GAGGTGCTGATGGTCGTCGACGGCGGCACCGGCCAGAACGCGATCAACCAGGTGCGCCAGTTCCACGAGGCGCTGGGCGT
CACCGGGCTCGTGGTCACCAAGCTCGACGGCACCGCGAAAGGCGGTGTGCTGTTCGCGCTGGCCGAACAAATGGGGATCC
CGGTCCGCTTCATCGGTGTCGGCGAGAAGGCCGAGGATCTCCAGCTTTTCGACGCACGTGCATTCGTCCGGGCGCTGCTG
AACCGCGGCGACGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (39-100)

• SRP54-type protein, GTPase domain (SRP54) (121-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.426	93.846	0.511