Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LV497_RS05150 Genome accession   NZ_CP090007
Coordinates   1147626..1148399 (+) Length   257 a.a.
NCBI ID   WP_049527607.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142626..1153399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS05130 (LV497_05130) mreD 1143095..1143619 (+) 525 WP_022495821.1 rod shape-determining protein MreD -
  LV497_RS05135 (LV497_05135) - 1143704..1145194 (+) 1491 WP_037611980.1 CHAP domain-containing protein -
  LV497_RS05140 (LV497_05140) - 1145406..1146371 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  LV497_RS05145 (LV497_05145) - 1146464..1147639 (+) 1176 WP_245084145.1 pyridoxal phosphate-dependent aminotransferase -
  LV497_RS05150 (LV497_05150) recO 1147626..1148399 (+) 774 WP_049527607.1 DNA repair protein RecO Machinery gene
  LV497_RS05155 (LV497_05155) plsX 1148611..1149615 (+) 1005 WP_110980756.1 phosphate acyltransferase PlsX -
  LV497_RS05160 (LV497_05160) - 1149615..1149860 (+) 246 WP_245084148.1 phosphopantetheine-binding protein -
  LV497_RS05165 (LV497_05165) purC 1150144..1150851 (+) 708 WP_245084151.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29694.80 Da        Isoelectric Point: 4.9545

>NTDB_id=553028 LV497_RS05150 WP_049527607.1 1147626..1148399(+) (recO) [Streptococcus salivarius strain SALI-10]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=553028 LV497_RS05150 WP_049527607.1 1147626..1148399(+) (recO) [Streptococcus salivarius strain SALI-10]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTTTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGGCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619