Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   LV497_RS02630 Genome accession   NZ_CP090007
Coordinates   664742..665479 (-) Length   245 a.a.
NCBI ID   WP_245085188.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 659742..670479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS02610 (LV497_02610) - 661067..661315 (-) 249 WP_002884680.1 KH domain-containing protein -
  LV497_RS02615 (LV497_02615) rpsP 661327..661599 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  LV497_RS02620 (LV497_02620) - 661762..663141 (-) 1380 WP_245085185.1 hypothetical protein -
  LV497_RS02625 (LV497_02625) - 663253..664431 (-) 1179 WP_002884300.1 sensor histidine kinase -
  LV497_RS02630 (LV497_02630) comE/comE1 664742..665479 (-) 738 WP_245085188.1 LytTR family DNA-binding domain-containing protein Regulator
  LV497_RS02635 (LV497_02635) - 665693..667006 (+) 1314 WP_245085191.1 matrixin family metalloprotease -
  LV497_RS02640 (LV497_02640) tehB 667786..668664 (+) 879 WP_245085194.1 SAM-dependent methyltransferase TehB -
  LV497_RS02645 (LV497_02645) - 668748..669500 (-) 753 WP_048673805.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27982.92 Da        Isoelectric Point: 4.6430

>NTDB_id=552991 LV497_RS02630 WP_245085188.1 664742..665479(-) (comE/comE1) [Streptococcus salivarius strain SALI-10]
MLSIIVLEDDALQRHRVSCLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=552991 LV497_RS02630 WP_245085188.1 664742..665479(-) (comE/comE1) [Streptococcus salivarius strain SALI-10]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGCTGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAACAAGAAACCAAGGCACAGAGTCTAACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TATATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTCTCGCGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

36.626

99.184

0.363