Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7T60_RS02320 Genome accession   NZ_CP072436
Coordinates   423518..423961 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 418518..428961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS02300 (J7T60_02290) - 419039..419793 (-) 755 Protein_392 NUDIX domain-containing protein -
  J7T60_RS02305 (J7T60_02295) - 419857..420963 (-) 1107 Protein_393 AAA family ATPase -
  J7T60_RS02310 (J7T60_02300) gdhA 421307..422659 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7T60_RS02315 (J7T60_02305) - 422917..423327 (+) 411 WP_011225559.1 peptide deformylase -
  J7T60_RS02320 (J7T60_02310) rcrR 423518..423961 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7T60_RS02325 (J7T60_02315) rcrP 423965..425779 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS02330 (J7T60_02320) rcrQ 425769..427547 (+) 1779 WP_179971476.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS02335 (J7T60_02325) - 427703..428074 (+) 372 WP_232085709.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=552974 J7T60_RS02320 WP_002945408.1 423518..423961(+) (rcrR) [Streptococcus thermophilus strain S24735]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=552974 J7T60_RS02320 WP_002945408.1 423518..423961(+) (rcrR) [Streptococcus thermophilus strain S24735]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
ATATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537