Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   LV497_RS01295 Genome accession   NZ_CP090007
Coordinates   289517..290428 (+) Length   303 a.a.
NCBI ID   WP_245084965.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 284517..295428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS01285 (LV497_01285) - 287734..288654 (-) 921 WP_118171874.1 multidrug resistance efflux transporter family protein -
  LV497_RS01290 (LV497_01290) - 288779..289300 (-) 522 WP_245084963.1 RDD family protein -
  LV497_RS01295 (LV497_01295) comR/comR1 289517..290428 (+) 912 WP_245084965.1 XRE family transcriptional regulator Regulator
  LV497_RS01300 (LV497_01300) - 290514..291350 (+) 837 WP_118171876.1 ABC transporter ATP-binding protein -
  LV497_RS01305 (LV497_01305) - 291343..292062 (+) 720 WP_118171877.1 ABC transporter permease -
  LV497_RS01310 (LV497_01310) comR/comR1 292220..293131 (+) 912 WP_118171878.1 XRE family transcriptional regulator Regulator
  LV497_RS01315 (LV497_01315) - 293237..294115 (-) 879 WP_118171879.1 hypothetical protein -
  LV497_RS01320 (LV497_01320) - 294487..294948 (-) 462 WP_118171880.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35633.09 Da        Isoelectric Point: 4.8100

>NTDB_id=552974 LV497_RS01295 WP_245084965.1 289517..290428(+) (comR/comR1) [Streptococcus salivarius strain SALI-10]
MSEDIKIEIGKRIREERERQGLTREHVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLGVSLNYLLGETKLDIPEDY
YKAKYKLMKSPVYGDPERIKKKLKDIEELYDNYIDVLPEDELLAIDIIERTLNFIAEGEGEDLVEIVFEDYLNQVLKKEQ
YTLNDLLLIKYYSVQCQSSSYDESMIENFRKKLIKQRLQGDELTNVELLGALSAIAGIYVMHHEYEHMKSLVDKMYEIIH
SIMQHSYQPGITMLEAKYYLFYENNKDKATELYKMATVLAEAFGDQVFIKNLKMEMKKDLNTK

Nucleotide


Download         Length: 912 bp        

>NTDB_id=552974 LV497_RS01295 WP_245084965.1 289517..290428(+) (comR/comR1) [Streptococcus salivarius strain SALI-10]
ATGTCAGAAGATATTAAAATCGAGATTGGAAAAAGAATCCGTGAAGAACGTGAACGTCAAGGATTAACACGTGAGCACGT
TTGTGATACCGAAGAAGAATTAACCGTCAAACAGTTGATGAGAATCGAGCTTGGACGTTCTTTACCAACCATTGTCAAAC
TGCAATACATCAGTGATAAATTGGGTGTTTCCCTCAACTATTTGTTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TACAAGGCTAAATATAAACTTATGAAGTCTCCTGTCTATGGTGACCCGGAACGTATCAAGAAAAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATGTGCTACCAGAGGACGAGCTTTTAGCTATTGATATCATTGAAAGAACATTAAATT
TCATAGCTGAAGGGGAGGGAGAAGATCTTGTTGAAATAGTATTTGAAGATTATTTAAATCAAGTATTGAAAAAGGAACAG
TACACATTGAATGATCTTTTATTGATAAAATATTATTCTGTACAGTGCCAATCATCTTCATATGATGAATCTATGATCGA
GAATTTTCGAAAAAAATTGATAAAACAAAGATTGCAAGGAGATGAATTAACCAATGTGGAACTATTGGGAGCATTATCAG
CTATAGCTGGGATATATGTTATGCACCATGAATACGAACATATGAAGTCTCTCGTCGATAAGATGTATGAAATCATACAT
TCCATTATGCAACACTCATATCAGCCAGGTATAACAATGCTTGAAGCAAAATACTATCTCTTCTATGAGAACAATAAAGA
TAAAGCAACTGAACTTTACAAAATGGCTACCGTACTAGCCGAAGCCTTCGGTGACCAAGTCTTCATCAAAAATCTTAAAA
TGGAAATGAAAAAAGACTTAAATACGAAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.216

97.69

0.403
  comR Streptococcus thermophilus LMD-9

39.863

96.04

0.383
  comR Streptococcus thermophilus LMG 18311

39.863

96.04

0.383
  comR Streptococcus salivarius strain HSISS4

39.863

96.04

0.383
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

39.726

96.37

0.383
  comR Streptococcus salivarius SK126

40

94.059

0.376