Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LV497_RS00245 Genome accession   NZ_CP090007
Coordinates   62761..63831 (+) Length   356 a.a.
NCBI ID   WP_151404784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57761..68831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS00230 (LV497_00230) glgP 57884..60145 (+) 2262 WP_037611558.1 glycogen/starch/alpha-glucan family phosphorylase -
  LV497_RS00235 (LV497_00235) - 60641..61381 (-) 741 WP_245084800.1 hypothetical protein -
  LV497_RS00240 (LV497_00240) - 61505..62494 (+) 990 WP_049545534.1 lipoate--protein ligase -
  LV497_RS00245 (LV497_00245) xerS 62761..63831 (+) 1071 WP_151404784.1 tyrosine recombinase XerS Machinery gene
  LV497_RS00250 (LV497_00250) - 63995..66535 (-) 2541 WP_245084804.1 M1 family metallopeptidase -
  LV497_RS00255 (LV497_00255) phoU 66669..67322 (-) 654 WP_037611566.1 phosphate signaling complex protein PhoU -
  LV497_RS00260 (LV497_00260) pstB 67351..68109 (-) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41339.43 Da        Isoelectric Point: 9.4643

>NTDB_id=552965 LV497_RS00245 WP_151404784.1 62761..63831(+) (xerS) [Streptococcus salivarius strain SALI-10]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADGIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=552965 LV497_RS00245 WP_151404784.1 62761..63831(+) (xerS) [Streptococcus salivarius strain SALI-10]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTTATGCCCTGGTTTGTTCTGGAGTATTATCAGTC
TAAACTATCGGTACCGTATTCTTTTACAACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGGTATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCTCGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAGACCATGGAATTTCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCCAA
ATCTTCGTTTTATAAGAATAAAGAACGTGATTTGGCTATCATTGCCTTGCTACTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATTTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATTGATGTTACTCGAAAAGGCGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCCAACCGTATTGATGCTTCGAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCTCATAAACTTCGACATACTCTGGCAACACGTCTTTATGATGCTACC
AAATCTCAAGTTTTAGTTAGTCACCAACTTGGCCATGCTTCTACTCAGGTTACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834