Detailed information
Bioinformatically predicted
Overview
| Name | amiA3 | Type | Regulator |
| Locus tag | J7T96_RS06895 | Genome accession | NZ_CP072434 |
| Coordinates | 1318572..1320545 (-) | Length | 657 a.a. |
| NCBI ID | WP_101415657.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain S24742 | ||
| Function | binding to XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1298541..1366760 | 1318572..1320545 | within | 0 |
| IScluster/Tn | 1320851..1326089 | 1318572..1320545 | flank | 306 |
Gene organization within MGE regions
Location: 1298541..1366760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J7T96_RS06800 (J7T96_06680) | liaF | 1298549..1299247 (-) | 699 | WP_014621793.1 | cell wall-active antibiotics response protein LiaF | - |
| J7T96_RS06805 | - | 1299502..1299669 (-) | 168 | WP_014727613.1 | potassium channel family protein | - |
| J7T96_RS06810 (J7T96_06690) | stkP/pknB | 1300304..1302175 (-) | 1872 | WP_014727614.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | Regulator |
| J7T96_RS06815 (J7T96_06695) | - | 1302175..1302912 (-) | 738 | WP_011681405.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| J7T96_RS06820 (J7T96_06700) | rsmB | 1302956..1304278 (-) | 1323 | WP_046206517.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| J7T96_RS06825 (J7T96_06705) | fmt | 1304268..1305203 (-) | 936 | WP_084828976.1 | methionyl-tRNA formyltransferase | - |
| J7T96_RS06830 (J7T96_06710) | - | 1305221..1307617 (-) | 2397 | WP_207559817.1 | primosomal protein N' | - |
| J7T96_RS06835 (J7T96_06715) | rpoZ | 1307759..1308073 (-) | 315 | WP_002951415.1 | DNA-directed RNA polymerase subunit omega | - |
| J7T96_RS06840 (J7T96_06720) | gmk | 1308095..1308724 (-) | 630 | WP_014608537.1 | guanylate kinase | - |
| J7T96_RS06845 (J7T96_06725) | ftsY | 1308957..1310348 (-) | 1392 | WP_011681410.1 | signal recognition particle-docking protein FtsY | - |
| J7T96_RS06850 (J7T96_06730) | - | 1310359..1311177 (-) | 819 | WP_011681411.1 | Cof-type HAD-IIB family hydrolase | - |
| J7T96_RS06855 (J7T96_06735) | - | 1311170..1311964 (-) | 795 | WP_084829753.1 | HAD-IIB family hydrolase | - |
| J7T96_RS06860 (J7T96_06740) | - | 1312148..1312525 (+) | 378 | WP_011226300.1 | GntR family transcriptional regulator | - |
| J7T96_RS06865 (J7T96_06745) | - | 1312530..1313228 (+) | 699 | WP_011226301.1 | ABC transporter ATP-binding protein | - |
| J7T96_RS06870 (J7T96_06750) | - | 1313240..1314025 (+) | 786 | WP_207559818.1 | ABC transporter permease | - |
| J7T96_RS06875 (J7T96_06755) | amiF | 1314075..1315004 (-) | 930 | WP_011681415.1 | ATP-binding cassette domain-containing protein | Regulator |
| J7T96_RS06880 (J7T96_06760) | amiE | 1314997..1316082 (-) | 1086 | WP_011226304.1 | ABC transporter ATP-binding protein | Regulator |
| J7T96_RS06885 (J7T96_06765) | amiD | 1316092..1317018 (-) | 927 | WP_064355560.1 | oligopeptide ABC transporter permease OppC | Regulator |
| J7T96_RS06890 (J7T96_06770) | amiC | 1317018..1318511 (-) | 1494 | WP_064355564.1 | ABC transporter permease | Regulator |
| J7T96_RS06895 (J7T96_06775) | amiA3 | 1318572..1320545 (-) | 1974 | WP_101415657.1 | peptide ABC transporter substrate-binding protein | Regulator |
| J7T96_RS06900 (J7T96_06780) | - | 1320851..1321998 (+) | 1148 | WP_095559415.1 | IS3 family transposase | - |
| J7T96_RS06905 (J7T96_06785) | - | 1322036..1322220 (-) | 185 | Protein_1307 | IS3 family transposase | - |
| J7T96_RS06910 | - | 1322211..1322623 (-) | 413 | Protein_1308 | ATP-binding cassette domain-containing protein | - |
| J7T96_RS06915 (J7T96_06800) | - | 1322655..1322969 (-) | 315 | Protein_1309 | TatD family hydrolase | - |
| J7T96_RS06920 (J7T96_06805) | - | 1323485..1324690 (+) | 1206 | WP_011681420.1 | OFA family MFS transporter | - |
| J7T96_RS06925 (J7T96_06810) | - | 1324737..1326089 (-) | 1353 | Protein_1311 | IS3 family transposase | - |
| J7T96_RS06930 (J7T96_06815) | pta | 1326175..1327158 (-) | 984 | WP_011227420.1 | phosphate acetyltransferase | - |
| J7T96_RS06935 (J7T96_06820) | - | 1327172..1328068 (-) | 897 | WP_011226316.1 | RluA family pseudouridine synthase | - |
| J7T96_RS06940 (J7T96_06825) | - | 1328065..1328901 (-) | 837 | WP_096811572.1 | NAD kinase | - |
| J7T96_RS06945 (J7T96_06830) | - | 1328873..1329547 (-) | 675 | WP_002951443.1 | GTP pyrophosphokinase family protein | - |
| J7T96_RS06950 (J7T96_06835) | - | 1329643..1330218 (+) | 576 | WP_207559819.1 | CYTH domain-containing protein | - |
| J7T96_RS06955 (J7T96_06840) | - | 1330582..1331553 (+) | 972 | WP_002951446.1 | ribose-phosphate diphosphokinase | - |
| J7T96_RS06960 (J7T96_06845) | - | 1331557..1332669 (+) | 1113 | WP_002948029.1 | cysteine desulfurase family protein | - |
| J7T96_RS06965 (J7T96_06850) | - | 1332671..1333018 (+) | 348 | WP_011226321.1 | DUF1831 domain-containing protein | - |
| J7T96_RS06970 (J7T96_06855) | - | 1333163..1333822 (+) | 660 | WP_014608556.1 | redox-sensing transcriptional repressor Rex | - |
| J7T96_RS06975 (J7T96_06860) | - | 1333815..1334510 (+) | 696 | WP_014608557.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| J7T96_RS06980 (J7T96_06865) | radC | 1334563..1335249 (-) | 687 | WP_011226324.1 | DNA repair protein RadC | - |
| J7T96_RS06985 (J7T96_06870) | - | 1335298..1337082 (-) | 1785 | WP_134973356.1 | rhamnan synthesis F family protein | - |
| J7T96_RS06990 (J7T96_06875) | - | 1337079..1338134 (-) | 1056 | WP_002948022.1 | glycosyltransferase | - |
| J7T96_RS06995 (J7T96_06880) | - | 1338154..1339359 (-) | 1206 | WP_014727633.1 | ABC transporter ATP-binding protein | - |
| J7T96_RS07000 (J7T96_06885) | - | 1339359..1340168 (-) | 810 | WP_207559820.1 | ABC transporter permease | - |
| J7T96_RS07005 (J7T96_06890) | - | 1340152..1341108 (-) | 957 | WP_014727634.1 | glycosyltransferase family 2 protein | - |
| J7T96_RS07010 (J7T96_06895) | cps2T | 1341105..1342253 (-) | 1149 | WP_002948014.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| J7T96_RS07015 (J7T96_06900) | - | 1342362..1343372 (-) | 1011 | WP_011226330.1 | glycosyltransferase family A protein | - |
| J7T96_RS07020 (J7T96_06905) | - | 1343369..1344646 (-) | 1278 | WP_014727635.1 | lipopolysaccharide biosynthesis protein | - |
| J7T96_RS07025 (J7T96_06910) | - | 1344639..1344971 (-) | 333 | WP_011226332.1 | DUF2304 domain-containing protein | - |
| J7T96_RS07030 (J7T96_06915) | - | 1344977..1345672 (-) | 696 | WP_171073564.1 | glycosyltransferase family 2 protein | - |
| J7T96_RS07035 (J7T96_06920) | rfbD | 1345749..1346600 (-) | 852 | WP_014727637.1 | dTDP-4-dehydrorhamnose reductase | - |
| J7T96_RS07040 (J7T96_06925) | - | 1346677..1348011 (-) | 1335 | WP_207559821.1 | DUF6056 family protein | - |
| J7T96_RS07045 (J7T96_06930) | - | 1348124..1349041 (-) | 918 | WP_002946425.1 | glycosyltransferase family 2 protein | - |
| J7T96_RS07050 (J7T96_06935) | - | 1349104..1350519 (-) | 1416 | WP_207559822.1 | DUF2142 domain-containing protein | - |
| J7T96_RS07055 (J7T96_06940) | - | 1350853..1351188 (-) | 336 | WP_002891474.1 | metal-sulfur cluster assembly factor | - |
| J7T96_RS07060 (J7T96_06945) | rpoD | 1351242..1352351 (-) | 1110 | WP_011226338.1 | RNA polymerase sigma factor RpoD | - |
| J7T96_RS07065 (J7T96_06950) | dnaG | 1352355..1354166 (-) | 1812 | WP_207559869.1 | DNA primase | - |
| J7T96_RS07070 (J7T96_06955) | mscL | 1354330..1354710 (+) | 381 | WP_207559823.1 | large conductance mechanosensitive channel protein MscL | - |
| J7T96_RS07075 (J7T96_06960) | rpsU | 1354870..1355046 (-) | 177 | WP_082309068.1 | 30S ribosomal protein S21 | - |
| J7T96_RS07080 (J7T96_06965) | - | 1355241..1356035 (-) | 795 | WP_014621826.1 | ABC transporter substrate-binding protein | - |
| J7T96_RS07085 (J7T96_06970) | - | 1356097..1357206 (-) | 1110 | WP_207559825.1 | aminotransferase | - |
| J7T96_RS07090 (J7T96_06975) | - | 1357553..1358350 (-) | 798 | WP_024010024.1 | transporter substrate-binding domain-containing protein | - |
| J7T96_RS07095 (J7T96_06980) | - | 1358347..1359177 (-) | 831 | WP_022097022.1 | transporter substrate-binding domain-containing protein | - |
| J7T96_RS07100 (J7T96_06985) | - | 1359391..1359855 (-) | 465 | WP_011681454.1 | 8-oxo-dGTP diphosphatase | - |
| J7T96_RS07105 (J7T96_06990) | uvrB | 1359900..1361891 (-) | 1992 | WP_002953358.1 | excinuclease ABC subunit UvrB | - |
| J7T96_RS07110 (J7T96_06995) | - | 1362578..1363514 (-) | 937 | Protein_1348 | CPBP family intramembrane glutamic endopeptidase | - |
| J7T96_RS07115 (J7T96_07000) | - | 1363712..1365922 (+) | 2211 | WP_100284785.1 | ABC transporter substrate-binding protein/permease | - |
| J7T96_RS07120 (J7T96_07005) | - | 1365922..1366662 (+) | 741 | WP_002945131.1 | amino acid ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 657 a.a. Molecular weight: 72235.26 Da Isoelectric Point: 5.1726
>NTDB_id=552875 J7T96_RS06895 WP_101415657.1 1318572..1320545(-) (amiA3) [Streptococcus thermophilus strain S24742]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNL
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVNQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVGWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASLQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLKE
KKESNEKAQKDLEKHVK
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNL
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVNQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVGWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASLQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLKE
KKESNEKAQKDLEKHVK
Nucleotide
Download Length: 1974 bp
>NTDB_id=552875 J7T96_RS06895 WP_101415657.1 1318572..1320545(-) (amiA3) [Streptococcus thermophilus strain S24742]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATCTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGGTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGACATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCCTCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAA
AAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATCTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGGTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGACATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCCTCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAA
AAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiA3 | Streptococcus thermophilus LMD-9 |
99.848 |
100 |
0.998 |
| amiA3 | Streptococcus thermophilus LMG 18311 |
98.63 |
100 |
0.986 |
| amiA | Streptococcus salivarius strain HSISS4 |
90.563 |
100 |
0.906 |