Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   THECO_RS01160 Genome accession   NC_019897
Coordinates   267368..268732 (+) Length   454 a.a.
NCBI ID   WP_015253252.1    Uniprot ID   -
Organism   Thermobacillus composti KWC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262368..273732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THECO_RS01135 (Theco_0236) - 262522..263526 (-) 1005 WP_015253247.1 SPFH domain-containing protein -
  THECO_RS01140 (Theco_0237) - 263551..264354 (-) 804 WP_015253248.1 TPM domain-containing protein -
  THECO_RS01145 (Theco_0238) - 264351..265376 (-) 1026 WP_015253249.1 TFIIB-type zinc ribbon-containing protein -
  THECO_RS01150 (Theco_0239) - 265465..266154 (-) 690 WP_015253250.1 PspA/IM30 family protein -
  THECO_RS01155 (Theco_0240) - 266333..267262 (+) 930 WP_015253251.1 S9 family peptidase -
  THECO_RS01160 (Theco_0241) radA 267368..268732 (+) 1365 WP_015253252.1 DNA repair protein RadA Machinery gene
  THECO_RS01165 (Theco_0242) disA 268759..269835 (+) 1077 WP_015253253.1 DNA integrity scanning diadenylate cyclase DisA -
  THECO_RS01170 (Theco_0243) pssA 270006..270743 (+) 738 WP_015253254.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  THECO_RS01175 (Theco_0244) - 270832..271218 (-) 387 WP_015253255.1 hypothetical protein -
  THECO_RS01180 (Theco_0245) - 271406..272500 (+) 1095 WP_015253256.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49205.72 Da        Isoelectric Point: 6.9521

>NTDB_id=55282 THECO_RS01160 WP_015253252.1 267368..268732(+) (radA) [Thermobacillus composti KWC4]
MAKIKTKFVCTECGTESPKWMGKCPGCGEWNSMVEERETAHKAQAASRAFQTQEKPKAIIHIEGGSEPRIETRMRELNRV
LGGGVVPGSLILVGGDPGIGKSTLLLQTSHELASAGRTVLYVSGEESVRQTKMRADRLGALHERLFVLCETNVEAIGEAI
EQVQPDFLVIDSIQTVYEPSVPSAPGSVAQVRECTAWFMRAAKIRGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEGE
RHHSYRLLRAVKNRFGSTNEIGIFEMSEAGLREVANPSELFLSERPLGVSGSTVAASMEGTRPVLVELQALVAPTMFPSP
RRMSAGIDHQRMALIIAVLEKRIGLFLQNQDAYLNVAGGVRLDEPAVDLAAAVSLASSFRDAPARPYDVIFGEVGLTGEV
RAVSRAEQRVKEAAKLGFKRVIMPERSMRGWKPPEGIEIIGVGSVEEALSVALG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=55282 THECO_RS01160 WP_015253252.1 267368..268732(+) (radA) [Thermobacillus composti KWC4]
ATGGCGAAGATCAAGACGAAGTTTGTCTGCACGGAGTGCGGCACGGAATCGCCGAAGTGGATGGGCAAATGCCCCGGCTG
CGGCGAATGGAACTCGATGGTCGAGGAGCGGGAGACCGCGCACAAAGCGCAGGCGGCGTCCCGCGCCTTCCAGACGCAAG
AAAAACCGAAAGCGATCATACACATAGAAGGCGGGAGCGAACCGCGAATCGAGACGCGCATGCGGGAACTGAACCGCGTG
CTCGGCGGCGGCGTCGTGCCCGGATCGCTCATCCTCGTCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGCTGCA
GACCTCGCACGAGCTGGCATCTGCCGGGCGGACGGTGCTCTACGTATCGGGCGAAGAGTCGGTCCGGCAGACGAAAATGC
GGGCGGACCGGCTGGGCGCGCTGCATGAGCGGCTGTTCGTCCTGTGCGAGACGAACGTCGAGGCGATCGGCGAGGCGATC
GAGCAGGTGCAGCCGGATTTTCTCGTCATTGACTCGATCCAGACGGTGTATGAGCCTTCCGTTCCTTCAGCGCCCGGCAG
CGTGGCGCAGGTGCGGGAATGCACCGCCTGGTTCATGCGCGCGGCGAAAATCCGGGGGATTGCAACCGTGCTGGTCGGGC
ATGTTACGAAGGAAGGCGCCATCGCCGGTCCGAGGCTCCTGGAACATATGGTGGACTGCGTCCTTTATTTTGAAGGCGAG
CGGCATCATTCGTACCGGCTGCTGCGGGCAGTCAAGAACCGGTTCGGCTCGACGAACGAGATCGGCATCTTCGAAATGTC
GGAAGCCGGCCTGCGCGAGGTGGCGAATCCGTCGGAACTGTTCCTGTCCGAGCGTCCGCTCGGCGTCTCCGGTTCGACGG
TCGCCGCCAGCATGGAGGGAACGCGGCCCGTGCTCGTCGAACTGCAGGCGCTGGTCGCGCCGACGATGTTCCCGTCTCCG
CGGCGCATGTCGGCCGGCATTGACCATCAGCGGATGGCGCTGATCATCGCCGTGCTCGAGAAGCGGATCGGCCTGTTCCT
CCAGAACCAGGACGCATACCTGAACGTCGCAGGCGGCGTCCGGCTGGACGAACCGGCGGTCGATCTGGCGGCCGCCGTCA
GCCTGGCATCCAGCTTCCGCGACGCCCCGGCGCGGCCGTATGACGTCATCTTCGGCGAAGTGGGGCTGACCGGCGAAGTG
CGCGCCGTCTCCCGCGCCGAGCAGCGGGTGAAGGAAGCGGCCAAGCTCGGGTTCAAGCGGGTCATCATGCCGGAGCGAAG
CATGAGGGGCTGGAAGCCTCCGGAGGGCATCGAGATCATCGGCGTCGGATCGGTGGAAGAAGCGCTCAGCGTCGCATTGG
GTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.083

100

0.665
  radA Streptococcus mitis NCTC 12261

57.906

98.899

0.573
  radA Streptococcus mitis SK321

57.906

98.899

0.573
  radA Streptococcus pneumoniae Rx1

57.684

98.899

0.57
  radA Streptococcus pneumoniae D39

57.684

98.899

0.57
  radA Streptococcus pneumoniae R6

57.684

98.899

0.57
  radA Streptococcus pneumoniae TIGR4

57.684

98.899

0.57

Multiple sequence alignment