Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LXA49_RS06100 Genome accession   NZ_CP089949
Coordinates   1212656..1213876 (-) Length   406 a.a.
NCBI ID   WP_000522334.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207656..1218876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS06085 (LXA49_06075) - 1208071..1210236 (+) 2166 WP_000726260.1 ABC transporter substrate-binding protein/permease -
  LXA49_RS06090 (LXA49_06080) - 1210236..1210976 (+) 741 WP_001096339.1 amino acid ABC transporter ATP-binding protein -
  LXA49_RS06095 (LXA49_06085) zwf 1211125..1212612 (+) 1488 WP_000096162.1 glucose-6-phosphate dehydrogenase -
  LXA49_RS06100 (LXA49_06090) pilA 1212656..1213876 (-) 1221 WP_000522334.1 signal recognition particle-docking protein FtsY Machinery gene
  LXA49_RS06105 (LXA49_06095) - 1213880..1214698 (-) 819 WP_000763447.1 Cof-type HAD-IIB family hydrolase -
  LXA49_RS06110 (LXA49_06100) - 1214698..1215492 (-) 795 WP_000153028.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45172.07 Da        Isoelectric Point: 4.2619

>NTDB_id=552811 LXA49_RS06100 WP_000522334.1 1212656..1213876(-) (pilA) [Streptococcus pneumoniae strain SN75752]
MGLFDRLFGKKEEPKIEEVVKEALENLDLSEDVDPTFTEVEEVSQEEAVLEESQDSEPAVGVSQEEIEELPEEEKLEHEG
TIEENNSEVLEAERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELR
YEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADT
FRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA
PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKG
LLEGLI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=552811 LXA49_RS06100 WP_000522334.1 1212656..1213876(-) (pilA) [Streptococcus pneumoniae strain SN75752]
ATGGGATTATTTGACCGTCTATTCGGAAAAAAAGAAGAACCTAAAATCGAAGAAGTTGTAAAAGAAGCTCTGGAAAATCT
TGATTTGTCTGAAGATGTTGATCCTACCTTCACAGAAGTTGAAGAAGTTTCTCAAGAAGAAGCTGTGCTTGAAGAAAGTC
AGGATTCAGAGCCAGCTGTAGGGGTTTCTCAAGAAGAAATAGAAGAATTACCAGAGGAAGAGAAGCTTGAGCACGAAGGA
ACTATAGAAGAAAATAATTCTGAAGTTCTTGAAGCAGAAAGGCCTCAAGCAGAAGAAACCGTTCAGGAAAAATATGACCG
CAGTCTTAAGAAAACTCGTACAGGTTTCGGTGCCCGCTTGAATGCCTTCTTTGCTAACTTCCGCTCTGTTGACGAAGAAT
TTTTTGAGGAACTGGAAGAACTGCTGATTATGAGTGATGTTGGTGTCCAAGTCGCTTCTAACTTAACGGAGGAACTACGT
TACGAAGCCAAGCTTGAAAATGCCAAGAAACCTGATGCACTTCGTCGTGTCATCATTGAGAAATTGGTTGAGCTTTATGA
AAAGGATGGCAGCTACGATGAAAGCATCCACTTCCAAGATAACTTGACAGTTATGCTCTTTGTTGGTGTGAATGGTGTTG
GGAAAACAACTTCTATCGGAAAACTAGCCCACCGCTACAAACGAACTGGTAAGAAGGTCATGCTGGTTGCAGCAGATACC
TTCCGTGCGGGTGCAGTAGCTCAGCTAGCTGAATGGGGCCGACGAGTAGATGTTCCAGTAGTAACTGGACCTGAAAAAGC
TGATCCAGCCAGCGTGGTCTTTGATGGTATGGAACGTGCCGTGGCTGAAGGTATCGATATTCTCATGATTGATACTGCTG
GTCGTCTGCAAAATAAGGATAACCTTATGGCTGAGTTGGAAAAGATTGGTCGTATTATCAAACGTGTTGTGCCAGAAGCA
CCACATGAAACCTTCTTGGCACTTGATGCATCAACAGGTCAAAATGCCCTAGTACAGGCCAAAGAATTTTCGAAAATCAC
ACCTTTAACGGGAATTGTTTTGACTAAGATTGATGGAACTGCTCGAGGAGGTGTGGTTCTAGCCATTCGTGAAGAACTCA
ATATTCCTGTAAAATTGATTGGTTTTGGTGAAAAAATCGATGATATTGGAGAGTTTAACTCAGAAAACTTTATGAAAGGT
CTCTTGGAAGGCTTAATCTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(116-182)

SRP54-type protein, GTPase domain (SRP54)

(203-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

35.68

100

0.362