Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LXA49_RS02095 Genome accession   NZ_CP089949
Coordinates   391208..391804 (-) Length   198 a.a.
NCBI ID   WP_000248790.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 386208..396804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS02090 (LXA49_02085) pbp1a 389052..391211 (-) 2160 WP_001039987.1 penicillin-binding protein PBP1A -
  LXA49_RS02095 (LXA49_02090) recU 391208..391804 (-) 597 WP_000248790.1 Holliday junction resolvase RecU Machinery gene
  LXA49_RS02100 (LXA49_02095) - 391870..392397 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  LXA49_RS02105 (LXA49_02100) gpsB 392467..392796 (+) 330 WP_000146522.1 cell division regulator GpsB -
  LXA49_RS02115 (LXA49_02110) - 393282..394439 (+) 1158 WP_000711385.1 class I SAM-dependent RNA methyltransferase -
  LXA49_RS02120 (LXA49_02115) mapZ 394452..395846 (+) 1395 WP_000039270.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23058.47 Da        Isoelectric Point: 10.0134

>NTDB_id=552771 LXA49_RS02095 WP_000248790.1 391208..391804(-) (recU) [Streptococcus pneumoniae strain SN75752]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEAKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLGYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=552771 LXA49_RS02095 WP_000248790.1 391208..391804(-) (recU) [Streptococcus pneumoniae strain SN75752]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACACAAGAAACCAA
CTCCTATTCAAATCGTACGAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGCCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGGATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49

100

0.495