Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U00_RS07650 Genome accession   NZ_CP072431
Coordinates   1469446..1469889 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24745     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464446..1474889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS07635 (J7U00_07620) - 1465333..1465704 (-) 372 WP_232981380.1 GNAT family acetyltransferase -
  J7U00_RS07640 (J7U00_07625) rcrQ 1465860..1467638 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  J7U00_RS07645 (J7U00_07630) rcrP 1467628..1469442 (-) 1815 WP_138496668.1 ABC transporter ATP-binding protein Regulator
  J7U00_RS07650 (J7U00_07635) rcrR 1469446..1469889 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U00_RS07655 (J7U00_07640) - 1470079..1470489 (-) 411 WP_011680804.1 peptide deformylase -
  J7U00_RS07660 (J7U00_07645) gdhA 1470747..1472099 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U00_RS07665 (J7U00_07650) - 1472443..1473549 (+) 1107 WP_014608024.1 AAA family ATPase -
  J7U00_RS07670 (J7U00_07655) - 1473613..1474365 (+) 753 WP_011680801.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=552763 J7U00_RS07650 WP_002945408.1 1469446..1469889(-) (rcrR) [Streptococcus thermophilus strain S24745]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=552763 J7U00_RS07650 WP_002945408.1 1469446..1469889(-) (rcrR) [Streptococcus thermophilus strain S24745]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537