Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   J7U00_RS03045 Genome accession   NZ_CP072431
Coordinates   569910..570836 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24745     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 564910..575836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS03035 (J7U00_03050) - 566379..568355 (+) 1977 Protein_591 peptide ABC transporter substrate-binding protein -
  J7U00_RS03040 (J7U00_03055) amiC 568417..569910 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  J7U00_RS03045 (J7U00_03060) amiD 569910..570836 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7U00_RS03050 (J7U00_03065) amiE 570846..571931 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U00_RS03055 (J7U00_03070) amiF 571924..572853 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U00_RS03060 (J7U00_03075) - 572903..573688 (-) 786 WP_002951425.1 hypothetical protein -
  J7U00_RS03065 (J7U00_03080) - 573700..574398 (-) 699 WP_207559903.1 ABC transporter ATP-binding protein -
  J7U00_RS03070 (J7U00_03085) - 574403..574780 (-) 378 WP_011681413.1 GntR family transcriptional regulator -
  J7U00_RS03075 (J7U00_03090) - 574965..575759 (+) 795 WP_138496582.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=552743 J7U00_RS03045 WP_002946409.1 569910..570836(+) (amiD) [Streptococcus thermophilus strain S24745]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=552743 J7U00_RS03045 WP_002946409.1 569910..570836(+) (amiD) [Streptococcus thermophilus strain S24745]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964