Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LXA46_RS05620 Genome accession   NZ_CP089948
Coordinates   1135479..1137146 (-) Length   555 a.a.
NCBI ID   WP_000923575.1    Uniprot ID   A0A0H2UQ59
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130479..1142146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA46_RS05590 (LXA46_05580) - 1130761..1131566 (-) 806 Protein_1124 IS5 family transposase -
  LXA46_RS05595 (LXA46_05585) - 1131574..1131876 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  LXA46_RS05600 (LXA46_05590) - 1131914..1132389 (-) 476 Protein_1126 PTS sugar transporter subunit IIA -
  LXA46_RS05605 (LXA46_05595) - 1132569..1132766 (+) 198 WP_000693247.1 hypothetical protein -
  LXA46_RS05610 (LXA46_05600) lepA 1132847..1134670 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  LXA46_RS05615 (LXA46_05605) - 1134749..1135477 (-) 729 WP_000133334.1 metallophosphoesterase -
  LXA46_RS05620 (LXA46_05610) recN 1135479..1137146 (-) 1668 WP_000923575.1 DNA repair protein RecN Machinery gene
  LXA46_RS05625 (LXA46_05615) - 1137153..1137584 (-) 432 WP_001034415.1 arginine repressor -
  LXA46_RS05630 (LXA46_05620) - 1137577..1138392 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  LXA46_RS05635 (LXA46_05625) - 1138385..1139260 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  LXA46_RS05640 (LXA46_05630) - 1139257..1139469 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  LXA46_RS05645 (LXA46_05635) xseA 1139447..1140787 (-) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  LXA46_RS05650 (LXA46_05640) udk 1140915..1141553 (-) 639 WP_001181378.1 uridine kinase -
  LXA46_RS05655 (LXA46_05645) - 1141661..1141963 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62867.38 Da        Isoelectric Point: 4.7067

>NTDB_id=552680 LXA46_RS05620 WP_000923575.1 1135479..1137146(-) (recN) [Streptococcus pneumoniae TIGR4]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSYLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=552680 LXA46_RS05620 WP_000923575.1 1135479..1137146(-) (recN) [Streptococcus pneumoniae TIGR4]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTATCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCAAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UQ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438