Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LXA46_RS01730 Genome accession   NZ_CP089948
Coordinates   349268..349864 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae TIGR4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344268..354864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA46_RS01725 (LXA46_01720) pbp1a 347112..349271 (-) 2160 WP_001040013.1 penicillin-binding protein PBP1A -
  LXA46_RS01730 (LXA46_01725) recU 349268..349864 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  LXA46_RS01735 (LXA46_01730) - 349930..350457 (+) 528 WP_000179547.1 DUF1273 domain-containing protein -
  LXA46_RS01740 (LXA46_01735) gpsB 350527..350856 (+) 330 WP_000146522.1 cell division regulator GpsB -
  LXA46_RS01750 (LXA46_01745) - 351342..352499 (+) 1158 WP_000711388.1 class I SAM-dependent RNA methyltransferase -
  LXA46_RS01755 (LXA46_01750) mapZ 352512..353906 (+) 1395 WP_000039291.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=552646 LXA46_RS01730 WP_000248787.1 349268..349864(-) (recU) [Streptococcus pneumoniae TIGR4]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=552646 LXA46_RS01730 WP_000248787.1 349268..349864(-) (recU) [Streptococcus pneumoniae TIGR4]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49