Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LVO07_RS17220 Genome accession   NZ_CP089930
Coordinates   3672617..3674044 (-) Length   475 a.a.
NCBI ID   WP_000980575.1    Uniprot ID   A0ABU1DNM3
Organism   Escherichia coli strain E69     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3667617..3679044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS17195 (LVO07_17195) hisL 3668642..3668692 (-) 51 WP_225762982.1 his operon leader peptide -
  LVO07_RS17200 (LVO07_17200) yeeZ 3669119..3669943 (+) 825 WP_000754742.1 SDR family oxidoreductase -
  LVO07_RS17205 (LVO07_17205) yeeY 3669989..3670918 (+) 930 WP_000803376.1 LysR substrate-binding domain-containing protein -
  LVO07_RS17210 (LVO07_17210) yoeI 3671133..3671195 (+) 63 WP_105279388.1 membrane protein YoeI -
  LVO07_RS17215 (LVO07_17215) plaP 3671185..3672543 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LVO07_RS17220 (LVO07_17220) sbcB 3672617..3674044 (-) 1428 WP_000980575.1 exodeoxyribonuclease I Machinery gene
  LVO07_RS17225 (LVO07_17225) dacD 3674254..3675420 (+) 1167 WP_010347049.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LVO07_RS17230 (LVO07_17230) sbmC 3675540..3676013 (+) 474 WP_001105402.1 DNA gyrase inhibitor SbmC -
  LVO07_RS17235 (LVO07_17235) yeeA 3676221..3677279 (+) 1059 WP_001200875.1 FUSC family protein -
  LVO07_RS17240 (LVO07_17240) tmaR 3677452..3677781 (+) 330 WP_000450409.1 DUF496 family protein -
  LVO07_RS17245 (LVO07_17245) - 3677883..3678326 (-) 444 WP_225762522.1 EutP/PduV family microcompartment system protein -
  LVO07_RS17250 (LVO07_17250) pduU 3678331..3678681 (-) 351 WP_032225599.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54516.77 Da        Isoelectric Point: 5.3476

>NTDB_id=552620 LVO07_RS17220 WP_000980575.1 3672617..3674044(-) (sbcB) [Escherichia coli strain E69]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNIIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLYSHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQDYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=552620 LVO07_RS17220 WP_000980575.1 3672617..3674044(-) (sbcB) [Escherichia coli strain E69]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTATGAAACCTTTGGCACGCACCCTGCGTTAGATCG
CCCTGCGCAGTTCGCTGCCATTCGCACCGATAGCGAATTCAATATCATCGGCGAACCAGAGGTTTTTTATTGCAAGCCTG
CAGATGATTATTTACCCCAACCAGGAGCAGTTTTAATCACGGGTATTACCCCGCAGGAAGCGCGGGCGAAAGGAGAAAAC
GAAGCTGCGTTTGCCGCTCGCATTCATTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTACGTTT
CGATGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCCTATGCCTGGAGTTGGCAGCATGATAACTCTC
GCTGGGATCTGCTGGACGTCATGCGCGCCTGTTATGCGCTGCGTCCGGAGGGGATCAATTGGCCTGAAAATGATGACGGT
CTACCGAGTTTTCGCCTTGAACATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCCGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTGAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTACAGCCATCGCAACA
AGCACAAATTGATGGCGTTGATTGATGTGCCACAGATGAAACCCCTGGTTCACGTTTCCGGTATGTTTGGTGCATGGCGC
GGCAATACCAGTTGGGTTGCGCCGCTGGCATGGCATCCTGAAAATCGCAATGCCGTGATTATGGTGGATTTAGCGGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACGCTGCGCGAGCGCCTGTATACCGCGAAAGCCGATCTGGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATTAATAAATGTCCGGTATTAGCACAGGCGAATACGCTTCGCCCGGAAGATGCC
GATCGGCTGGGCATTAATCGCCAGCATTGTCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCTGAAGCCGAACCATTTACGCCTTCAGATAACGTGGATGCCCAACTTTATAACGGCTTTTTCAGCG
ACGCCGATCGCGCGGCAATGAAAATTGTACTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACCTTTGTCGAT
AAACGCATTGAGAAGCTGTTGTTCAATTATCGTGCGCGTAACTTCCCAGGAACGCTGGACTACGCCGAACAGCAACGCTG
GCTGGAGCACCGTCGTCAGGTCTTCACGCCAGAGTTTTTGCAAGATTATGCTGATGAATTGCAAATGCTGGCACAACAAT
ATGCCGATGATAAAGAGAAAGTGGCGCTGTTAAAGGCGCTTTGGCAGTACGCAGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579