Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U22_RS06765 Genome accession   NZ_CP072428
Coordinates   1311377..1311820 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1306377..1316820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS06750 (J7U22_06735) - 1307263..1307634 (-) 372 WP_232981380.1 GNAT family acetyltransferase -
  J7U22_RS06755 (J7U22_06740) rcrQ 1307790..1309568 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  J7U22_RS06760 (J7U22_06745) - 1309558..1311373 (-) 1816 Protein_1315 ABC transporter ATP-binding protein -
  J7U22_RS06765 (J7U22_06750) rcrR 1311377..1311820 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U22_RS06770 (J7U22_06755) - 1312010..1312420 (-) 411 WP_011680804.1 peptide deformylase -
  J7U22_RS06775 (J7U22_06760) gdhA 1312678..1314030 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U22_RS06780 (J7U22_06765) - 1314375..1315481 (+) 1107 WP_014608024.1 AAA family ATPase -
  J7U22_RS06785 (J7U22_06770) - 1315545..1316297 (+) 753 WP_011680801.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=552584 J7U22_RS06765 WP_002945408.1 1311377..1311820(-) (rcrR) [Streptococcus thermophilus strain S24749]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=552584 J7U22_RS06765 WP_002945408.1 1311377..1311820(-) (rcrR) [Streptococcus thermophilus strain S24749]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537