Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J7U22_RS06675 Genome accession   NZ_CP072428
Coordinates   1290500..1292305 (-) Length   601 a.a.
NCBI ID   WP_084831012.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285500..1297305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS06665 (J7U22_06645) - 1288407..1289549 (-) 1143 WP_138496532.1 peptidyl-prolyl cis-trans isomerase -
  J7U22_RS06670 (J7U22_06650) - 1289611..1290318 (-) 708 WP_023909440.1 O-methyltransferase -
  J7U22_RS06675 (J7U22_06655) pepF 1290500..1292305 (-) 1806 WP_084831012.1 oligoendopeptidase F Regulator
  J7U22_RS06680 (J7U22_06660) - 1292316..1293275 (-) 960 WP_011680817.1 competence protein CoiA -
  J7U22_RS06685 (J7U22_06665) - 1294573..1295469 (+) 897 WP_014608039.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69224.44 Da        Isoelectric Point: 4.5863

>NTDB_id=552582 J7U22_RS06675 WP_084831012.1 1290500..1292305(-) (pepF) [Streptococcus thermophilus strain S24749]
MSDNRCHLEEKYTWDLTTIFATDADWETEYESIVQDLKKASSFAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYNAKASNLYSQLSEAFAYFEPEFMALEAEKLVSFKEQEPDLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFITLMESKNREVRKGAYEAMYRTYEQFQHTYAQTLQGVVKVH
NYMAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLELDKLKMYDVYAPLSETETALTYEEALK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVNDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGNEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=552582 J7U22_RS06675 WP_084831012.1 1290500..1292305(-) (pepF) [Streptococcus thermophilus strain S24749]
ATGTCAGACAATCGTTGTCATTTAGAAGAAAAATATACATGGGATTTGACCACCATTTTTGCGACAGACGCTGATTGGGA
GACTGAATATGAAAGCATTGTTCAGGATTTGAAGAAGGCTAGTTCCTTTGCTGGTCACCTCTTGGACTCAGCCAAGAATT
TGCTTGAGGCAACAGAACTTTATATGAGTTTGATGCGTCGTTTGGAAAAAATCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAGTACAATGCCAAAGCCTCAAACCTATACTCACAGTTGAGTGAAGCCTTTGC
CTACTTTGAGCCTGAATTTATGGCTTTGGAAGCTGAAAAATTAGTATCCTTCAAAGAACAAGAGCCAGATCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAAGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAGCAGCT
GGTGATATTTTTAACGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTTCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGAATCGTGAAGTCCGTAAGGGAG
CCTATGAAGCTATGTATAGAACTTATGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTCAAGGTTCAC
AATTATATGGCTAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
CGACTCACTCTTAGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTGTTGGAAC
TTGATAAGCTTAAGATGTATGATGTTTATGCACCACTTTCTGAGACAGAGACTGCTCTTACTTATGAAGAAGCCCTCAAG
AAAGCAGAGGAAGTCTTGGCTATCTTTGGTGAGGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
TGTCCACCCTAACAAAGGAAAACGTTCAGGTGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACA
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCTGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAACGATGATAAGACACGTTTTGCTATCCTTAACCACTATTTAGATGGATTTAAGGGAACCGTCT
TCCGTCAAACGCAATTTGCCGAGTTTGAGCATGCTATCCATGAAGCGGATGCATCGGGTCAAATCTTGACAGCAGACTTC
ATGAATAAGCTTTATGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTATGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTTTATCAATATGCTACAGGATTTGCAGCAGCAAGCTACTTGGCAG
AAAAGATTGTTCACGGTAATGAAGAAGATAAAGAAGCTTACCTTACGTACCTTAAGGCAGGTAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGACATGACCAACACTGACTACTTGGATGCAGCTTTCAAGGTTTTCGAAGACCGCTT
AGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCATCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

96.007

100

0.96