Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LVO07_RS08870 Genome accession   NZ_CP089930
Coordinates   1860656..1861648 (-) Length   330 a.a.
NCBI ID   WP_000224480.1    Uniprot ID   A0ABU1DTJ0
Organism   Escherichia coli strain E69     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855656..1866648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS08860 (LVO07_08860) yieP 1859731..1860423 (+) 693 WP_001131152.1 FadR/GntR family transcriptional regulator -
  LVO07_RS08865 (LVO07_08865) - 1860443..1860574 (+) 132 Protein_1724 hypothetical protein -
  LVO07_RS08870 (LVO07_08870) cytR 1860656..1861648 (-) 993 WP_000224480.1 ribose operon transcriptional repressor RbsR Regulator
  LVO07_RS08875 (LVO07_08875) rbsK 1861652..1862581 (-) 930 WP_225762967.1 ribokinase -
  LVO07_RS08880 (LVO07_08880) rbsB 1862707..1863597 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LVO07_RS08885 (LVO07_08885) rbsC 1863622..1864587 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LVO07_RS08890 (LVO07_08890) rbsA 1864592..1866097 (-) 1506 WP_000387776.1 ribose ABC transporter ATP-binding protein RbsA -
  LVO07_RS08895 (LVO07_08895) rbsD 1866105..1866524 (-) 420 WP_032226881.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36575.87 Da        Isoelectric Point: 4.9420

>NTDB_id=552582 LVO07_RS08870 WP_000224480.1 1860656..1861648(-) (cytR) [Escherichia coli strain E69]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTIPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLEGYRAAMKRAGLDVPDGYEVTGDFEFNGGFDAMQQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAGLYVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRIAQPNLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=552582 LVO07_RS08870 WP_000224480.1 1860656..1861648(-) (cytR) [Escherichia coli strain E69]
TTGGCCACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACCGTTTCTCACGTCATCAATAAAGATCGCTT
CGTCAGCGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAGGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAGCTCAATCAGACTCGAACCATTGGCATGTTGATTACTGCCAGTACCAATCCTTTCTATTCCGAACTGGTGCGTGGC
GTTGAACGCAGTTGCTTCGAACGCGGTTATAGCCTTGTTCTTTGTAATACCGAAGGCGATGAGCAGCGAATGAATCGCAA
TCTGGAAACGCTGATGCAAAAGCGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACACACCAGCCTTCGCGTGAAATAA
TGCAACGTTATCCAACAATCCCTACTGTGATGATGGACTGGGCGCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGATTTAGCGACGCAATATCTGATCGACAAAGGTTATACCCGAATTGCCTGTATTACCGGTCCGTT
GGATAAAACGCCTGCGCGCTTGCGGCTGGAAGGTTATCGGGCGGCAATGAAGCGTGCTGGCCTTGACGTTCCTGATGGTT
ATGAAGTCACTGGCGATTTTGAATTTAACGGCGGGTTTGACGCGATGCAGCAATTGTTATCGCATCCGCTGCGCCCCCAG
GCAGTCTTTACTGGAAATGACGCTATGGCAGTTGGCGTATACCAGGCTCTATATCAGGCTGGGTTATATGTCCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCGCTCACTACAATTCATCAACCAAAAG
ATGAACTGGGAGAGCTGGCGATTGATGTACTCATCCACCGGATAGCACAGCCAAATCTACAGCAACAACGACTACAACTT
ACGCCGATACTGATGGAGCGCGGCTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361