Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   J7U22_RS02200 Genome accession   NZ_CP072428
Coordinates   426081..427166 (+) Length   361 a.a.
NCBI ID   WP_011226304.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 421081..432166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS02185 (J7U22_02185) amiA 421623..423590 (+) 1968 WP_116920313.1 peptide ABC transporter substrate-binding protein Regulator
  J7U22_RS02190 (J7U22_02190) amiC 423652..425145 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  J7U22_RS02195 (J7U22_02195) amiD 425145..426071 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7U22_RS02200 (J7U22_02200) amiE 426081..427166 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U22_RS02205 (J7U22_02205) amiF 427159..428088 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U22_RS02210 (J7U22_02210) - 428138..428923 (-) 786 WP_002951425.1 hypothetical protein -
  J7U22_RS02215 (J7U22_02215) - 428935..429633 (-) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  J7U22_RS02220 (J7U22_02220) - 429638..430015 (-) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U22_RS02225 (J7U22_02225) - 430201..430995 (+) 795 WP_180479479.1 HAD-IIB family hydrolase -
  J7U22_RS02230 (J7U22_02230) - 430988..431803 (+) 816 WP_180473278.1 Cof-type HAD-IIB family hydrolase -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39864.62 Da        Isoelectric Point: 4.7435

>NTDB_id=552565 J7U22_RS02200 WP_011226304.1 426081..427166(+) (amiE) [Streptococcus thermophilus strain S24749]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDNGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=552565 J7U22_RS02200 WP_011226304.1 426081..427166(+) (amiE) [Streptococcus thermophilus strain S24749]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGAAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATCGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGTATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGATGATAATGGAAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

100

100

1

  amiE Streptococcus thermophilus LMD-9

100

100

1

  amiE Streptococcus salivarius strain HSISS4

96.953

100

0.97

  oppD Streptococcus mutans UA159

54.441

96.676

0.526