Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A7A1_RS12090 Genome accession   NC_019896
Coordinates   2379008..2379787 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374008..2384787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS12060 (A7A1_3462) fliH 2374027..2374779 (-) 753 WP_044052687.1 flagellar assembly protein FliH -
  A7A1_RS12065 (A7A1_3463) fliG 2374772..2375788 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  A7A1_RS12070 (A7A1_3464) fliF 2375801..2377411 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  A7A1_RS12075 (A7A1_3465) fliE 2377457..2377777 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  A7A1_RS12080 (A7A1_3466) flgC 2377788..2378240 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  A7A1_RS12085 (A7A1_3467) flgB 2378240..2378629 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  A7A1_RS12090 (A7A1_3468) codY 2379008..2379787 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A7A1_RS12095 (A7A1_3469) hslU 2379827..2381230 (-) 1404 WP_015252099.1 HslU--HslV peptidase ATPase subunit -
  A7A1_RS12100 (A7A1_3470) clpQ 2381247..2381792 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  A7A1_RS12105 (A7A1_3471) xerC 2381805..2382719 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  A7A1_RS12110 (A7A1_3472) trmFO 2382787..2384094 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=55247 A7A1_RS12090 WP_003220850.1 2379008..2379787(-) (codY) [Bacillus subtilis subsp. subtilis str. BSP1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=55247 A7A1_RS12090 WP_003220850.1 2379008..2379787(-) (codY) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment