Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LRS74_RS26150 Genome accession   NZ_CP089746
Coordinates   6208798..6210888 (-) Length   696 a.a.
NCBI ID   WP_277743291.1    Uniprot ID   -
Organism   Streptomyces sp. LX-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6203798..6215888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS74_RS26130 (LRS74_26145) pgl 6204219..6205001 (-) 783 WP_277743289.1 6-phosphogluconolactonase -
  LRS74_RS26135 (LRS74_26150) opcA 6204998..6206116 (-) 1119 WP_277743290.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  LRS74_RS26140 (LRS74_26155) zwf 6206113..6207639 (-) 1527 WP_144384603.1 glucose-6-phosphate dehydrogenase -
  LRS74_RS26145 (LRS74_26160) tal 6207645..6208763 (-) 1119 WP_144384602.1 transaldolase -
  LRS74_RS26150 (LRS74_26165) recP/tkt 6208798..6210888 (-) 2091 WP_277743291.1 transketolase Machinery gene
  LRS74_RS26155 (LRS74_26170) - 6211373..6212326 (+) 954 WP_144384600.1 heme o synthase -
  LRS74_RS26160 (LRS74_26175) - 6212496..6212861 (+) 366 WP_277743292.1 hypothetical protein -
  LRS74_RS26165 (LRS74_26180) - 6212974..6214056 (+) 1083 WP_277743293.1 amidohydrolase -
  LRS74_RS26170 (LRS74_26185) - 6214017..6215024 (-) 1008 WP_277743294.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 75176.96 Da        Isoelectric Point: 4.9605

>NTDB_id=552441 LRS74_RS26150 WP_277743291.1 6208798..6210888(-) (recP/tkt) [Streptomyces sp. LX-29]
MSTKPTTTDLEWTELDQRAVDTARVLAMDSVQKVGNGHPGTAMSLAPAAYLLFQKLMRHDPSDANWIGRDRFVLSPGHTS
LTLYVQLFLSGYGLELDDLKSFRTWGSLTPGHPEHGHTVGVETTTGPLGQGIANAVGMAMAARYERGLFDPEAAEGASPF
DHTIWAIVSDGDLEEGISAEASSLAGHQKLGNIVALYDDNHISIEGDTETAFSEDVLKRYEAYGWHVQRIEQAANGDFDV
HALHAAMKAAQAETERPSIIAARTIIAWPAPNAQNTEASHGSALGAEEVAATKRVMGFDPEQDFQVESEVLAHARAVLDR
GREAHAAWDKQLQEWRNNNSERAAAFDRIVAGELPEGWERAVPEFEAGKDVATRKASGTVLKALGAVIPELWGGSADLAG
SNNTTIDPSSSFLPKGNPLTEADPYGRTIHFGIREHAMGSTMNGIALHGNTRVYGGTFLVFSDYMRPAVRLAALMKLPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNIVRPADANETAIAWREIMRRHNDRPAPHGIALTRQNVPTYALNEDAA
KGGYVLFEAEADGQAATPQVILIGTGSEVQLAVEAREQLQSAGIPTRVVSMPSVEWFEEQDQAYRDSVLPSSVKARVAVE
AGIGLTWHRYVGEAGRIVSLEHFGASADYKVLFREFGLTADAVTEAARESLSAAGR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=552441 LRS74_RS26150 WP_277743291.1 6208798..6210888(-) (recP/tkt) [Streptomyces sp. LX-29]
GTGAGCACAAAGCCGACCACCACAGACCTTGAATGGACCGAACTGGACCAGCGGGCCGTCGACACCGCTCGCGTCCTGGC
CATGGACTCCGTGCAGAAGGTCGGCAACGGCCACCCTGGCACGGCCATGAGCCTCGCGCCCGCCGCGTACCTGCTCTTCC
AGAAGCTGATGCGGCACGACCCGTCCGACGCGAACTGGATCGGCCGCGACCGGTTCGTCCTGTCCCCCGGGCACACCAGC
CTGACCCTCTACGTCCAGCTCTTCCTGTCCGGCTACGGCCTGGAGCTGGACGACCTGAAGTCCTTCCGCACCTGGGGCAG
CCTGACCCCGGGCCACCCGGAGCACGGGCACACGGTCGGCGTGGAGACCACCACCGGCCCGCTCGGCCAGGGCATCGCCA
ACGCCGTGGGCATGGCCATGGCCGCCCGCTACGAGCGCGGTCTGTTCGACCCGGAGGCCGCCGAGGGCGCCTCCCCCTTC
GACCACACCATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCATCTCCGCGGAGGCGTCCTCGCTCGCCGGCCA
CCAGAAGCTCGGCAACATCGTCGCCCTCTACGACGACAACCACATCTCCATCGAGGGTGACACCGAGACCGCCTTCTCCG
AGGACGTCCTCAAGCGTTACGAGGCGTACGGCTGGCACGTCCAGCGCATCGAGCAGGCCGCCAACGGCGACTTCGACGTG
CACGCGCTGCACGCCGCGATGAAGGCGGCGCAGGCCGAGACCGAGCGCCCGTCGATCATCGCCGCCCGCACGATCATCGC
CTGGCCGGCCCCGAACGCGCAGAACACCGAGGCCTCGCACGGCTCGGCGCTCGGCGCCGAGGAGGTCGCCGCCACCAAGC
GCGTGATGGGCTTCGACCCGGAGCAGGACTTCCAGGTGGAGTCCGAGGTGCTGGCGCACGCCCGCGCGGTGCTCGACCGC
GGTCGCGAGGCGCACGCCGCCTGGGACAAGCAGCTCCAGGAGTGGCGCAACAACAACTCCGAGCGCGCCGCCGCGTTCGA
CCGCATCGTCGCCGGCGAGCTGCCCGAGGGCTGGGAGCGCGCGGTGCCGGAGTTCGAGGCCGGCAAGGACGTGGCGACCC
GCAAGGCGTCGGGCACCGTTCTCAAGGCGCTGGGCGCGGTCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACCACCATCGACCCGTCGTCGTCCTTCCTCCCGAAGGGCAACCCGCTGACGGAGGCCGACCCGTACGGTCG
CACCATCCACTTCGGCATCCGCGAGCACGCCATGGGCTCGACCATGAACGGCATCGCGCTGCACGGGAACACCCGGGTCT
ACGGCGGCACCTTCCTGGTCTTCTCCGACTACATGCGCCCGGCCGTGCGCCTGGCCGCGCTGATGAAGCTGCCGGTCACC
TACGTGTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCCACCCACCAGCCGGTCGAGCACCTCGCCGCGCTGCG
CGCCATCCCGGGCCTCAACATCGTCCGCCCGGCCGACGCCAACGAGACGGCGATCGCCTGGCGCGAGATCATGCGCCGGC
ACAACGACCGGCCCGCCCCGCACGGCATCGCGCTGACCCGGCAGAACGTGCCGACGTACGCGCTCAACGAGGACGCGGCC
AAGGGCGGTTACGTCCTGTTCGAGGCCGAGGCCGACGGCCAGGCCGCGACGCCGCAGGTGATCCTGATCGGCACCGGCTC
CGAGGTCCAGCTGGCCGTCGAGGCGCGCGAGCAGCTGCAGTCCGCGGGCATCCCGACCCGTGTGGTGTCGATGCCGTCGG
TCGAGTGGTTCGAGGAGCAGGACCAGGCGTACCGCGACAGCGTGCTGCCGTCGTCGGTGAAGGCGCGGGTCGCCGTCGAG
GCCGGCATCGGCCTGACCTGGCACCGCTACGTCGGCGAGGCGGGGCGCATCGTCTCGCTGGAGCACTTCGGTGCGAGCGC
CGACTACAAGGTGCTGTTCCGGGAGTTCGGGCTGACCGCCGACGCGGTCACCGAGGCGGCCCGGGAATCCCTGAGCGCCG
CCGGTCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-551)

Transketolase, C-terminal domain (Transketolase_C)

(576-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.347

97.845

0.434