Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A7A1_RS09755 Genome accession   NC_019896
Coordinates   1859590..1860210 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854590..1865210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS09735 (A7A1_2924) dnaD 1854880..1855578 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  A7A1_RS09740 (A7A1_2923) nth 1855597..1856256 (+) 660 WP_009967580.1 endonuclease III -
  A7A1_RS09745 (A7A1_2922) ypoC 1856253..1856747 (+) 495 WP_009967579.1 YpoC family protein -
  A7A1_RS09750 (A7A1_2921) ponA 1856824..1859568 (-) 2745 WP_015251829.1 PBP1A family penicillin-binding protein -
  A7A1_RS09755 (A7A1_2920) recU 1859590..1860210 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  A7A1_RS09760 (A7A1_2919) yppC 1860251..1861213 (+) 963 WP_015251830.1 DUF2515 domain-containing protein -
  A7A1_RS09765 (A7A1_2918) sspM 1861238..1861342 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  A7A1_RS09770 (A7A1_2917) yppD 1861541..1861786 (+) 246 WP_015251831.1 YppD family protein -
  A7A1_RS09775 (A7A1_2916) yppE 1861832..1862203 (+) 372 WP_003246080.1 YppE family protein -
  A7A1_RS09780 (A7A1_2915) yppF 1862242..1862430 (-) 189 WP_003230690.1 YppF family protein -
  A7A1_RS09785 (A7A1_2914) sppG 1862618..1862995 (+) 378 WP_015251832.1 YppG family protein -
  A7A1_RS09790 (A7A1_2913) ypqA 1863016..1863435 (-) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  A7A1_RS09795 (A7A1_2912) ptsA 1863573..1864079 (+) 507 WP_044052678.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=55244 A7A1_RS09755 WP_004399067.1 1859590..1860210(-) (recU) [Bacillus subtilis subsp. subtilis str. BSP1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=55244 A7A1_RS09755 WP_004399067.1 1859590..1860210(-) (recU) [Bacillus subtilis subsp. subtilis str. BSP1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment