Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HP1CH_RS06120 Genome accession   NZ_AP013355
Coordinates   1261607..1262656 (+) Length   349 a.a.
NCBI ID   WP_000115493.1    Uniprot ID   O25802
Organism   Helicobacter pylori 26695-1CH     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256607..1267656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CH_RS06105 - 1257739..1258776 (-) 1038 WP_042964689.1 DUF874 family protein -
  HP1CH_RS06110 asd 1259190..1260230 (-) 1041 WP_000860874.1 aspartate-semialdehyde dehydrogenase -
  HP1CH_RS06115 hisS 1260217..1261545 (-) 1329 WP_000632518.1 histidine--tRNA ligase -
  HP1CH_RS06120 waaF 1261607..1262656 (+) 1050 WP_000115493.1 lipopolysaccharide heptosyltransferase II Regulator
  HP1CH_RS06125 - 1262847..1263128 (-) 282 WP_000744184.1 hypothetical protein -
  HP1CH_RS06130 - 1263346..1264335 (+) 990 WP_001187417.1 aldo/keto reductase -
  HP1CH_RS06135 fusA 1264879..1266957 (-) 2079 WP_000101814.1 elongation factor G -
  HP1CH_RS06140 rpsG 1266969..1267436 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39447.18 Da        Isoelectric Point: 9.4790

>NTDB_id=55242 HP1CH_RS06120 WP_000115493.1 1261607..1262656(+) (waaF) [Helicobacter pylori 26695-1CH]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDNTKKSFFRLLAIHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPSLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASMQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNAKNHLCMKSITPLEVLEAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=55242 HP1CH_RS06120 WP_000115493.1 1261607..1262656(+) (waaF) [Helicobacter pylori 26695-1CH]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGTTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCATTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTCATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCATGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGCAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(77-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25802

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.5

98.567

0.37

Multiple sequence alignment