Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J6B58_RS11850 Genome accession   NZ_CP072398
Coordinates   2473047..2473427 (-) Length   126 a.a.
NCBI ID   WP_045544207.1    Uniprot ID   A0A1Y1P0I7
Organism   Acinetobacter baumannii strain KSK2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2468047..2478427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B58_RS11820 (J6B58_11820) tadA 2468166..2468669 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  J6B58_RS11825 (J6B58_11825) - 2468676..2469800 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  J6B58_RS11830 (J6B58_11830) ung 2469797..2470510 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  J6B58_RS11835 (J6B58_11835) - 2470561..2471157 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  J6B58_RS11840 (J6B58_11840) gspK 2471387..2472346 (-) 960 WP_045544206.1 type II secretion system minor pseudopilin GspK -
  J6B58_RS11845 (J6B58_11845) xcpW 2472346..2473047 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J6B58_RS11850 (J6B58_11850) xcpV 2473047..2473427 (-) 381 WP_045544207.1 type II secretion system minor pseudopilin GspI Machinery gene
  J6B58_RS11855 (J6B58_11855) - 2473417..2473971 (-) 555 WP_000841373.1 type II secretion system protein -
  J6B58_RS11860 (J6B58_11860) - 2473981..2474589 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  J6B58_RS11865 (J6B58_11865) - 2474627..2475400 (-) 774 WP_000497298.1 TatD family hydrolase -
  J6B58_RS11870 (J6B58_11870) - 2475418..2475759 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  J6B58_RS11875 (J6B58_11875) - 2475771..2476751 (-) 981 WP_045544208.1 DNA polymerase III subunit delta' -
  J6B58_RS11880 (J6B58_11880) kdsB 2476763..2477524 (-) 762 WP_045544209.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14035.30 Da        Isoelectric Point: 9.8004

>NTDB_id=552355 J6B58_RS11850 WP_045544207.1 2473047..2473427(-) (xcpV) [Acinetobacter baumannii strain KSK2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTFQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=552355 J6B58_RS11850 WP_045544207.1 2473047..2473427(-) (xcpV) [Acinetobacter baumannii strain KSK2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTTCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y1P0I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992