Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   J5A60_RS06500 Genome accession   NZ_CP072381
Coordinates   1364534..1365055 (-) Length   173 a.a.
NCBI ID   WP_212509845.1    Uniprot ID   -
Organism   Aggregatibacter sp. oral taxon 513 strain W11186     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359534..1370055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5A60_RS06485 (J5A60_06485) comQ 1362835..1363137 (-) 303 WP_212509843.1 DUF5374 domain-containing protein Machinery gene
  J5A60_RS06490 (J5A60_06490) - 1363112..1363807 (-) 696 WP_212509844.1 DUF2572 family protein -
  J5A60_RS06495 (J5A60_06495) - 1363804..1364547 (-) 744 WP_371817614.1 hypothetical protein -
  J5A60_RS06500 (J5A60_06500) comN 1364534..1365055 (-) 522 WP_212509845.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J5A60_RS06520 (J5A60_06520) pal 1365749..1366201 (-) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  J5A60_RS06525 (J5A60_06525) tolB 1366216..1367496 (-) 1281 WP_212509846.1 Tol-Pal system beta propeller repeat protein TolB -
  J5A60_RS06530 (J5A60_06530) tolA 1367530..1368645 (-) 1116 WP_212509847.1 cell envelope integrity protein TolA -
  J5A60_RS06535 (J5A60_06535) tolR 1368663..1369085 (-) 423 WP_006718996.1 colicin uptake protein TolR -
  J5A60_RS06540 (J5A60_06540) tolQ 1369171..1369860 (-) 690 WP_006718998.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19866.07 Da        Isoelectric Point: 8.4945

>NTDB_id=552244 J5A60_RS06500 WP_212509845.1 1364534..1365055(-) (comN) [Aggregatibacter sp. oral taxon 513 strain W11186]
MQKGFTLLEMLIALFILSLLLMLALPTWQQSSQQNILQKEQQKLYAFLRQIQARVENSSDIWFLMASRDLSGKRWCLTAQ
IKNHHLCDCLALQGCPPHVSAHFYYPAFSDTMLISKRYYPLELTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=552244 J5A60_RS06500 WP_212509845.1 1364534..1365055(-) (comN) [Aggregatibacter sp. oral taxon 513 strain W11186]
ATGCAAAAGGGATTTACTTTGTTGGAAATGTTAATCGCACTTTTCATTCTTAGTTTATTGTTGATGCTTGCTTTGCCTAC
ATGGCAGCAATCTTCACAGCAGAATATCTTACAAAAAGAGCAACAAAAACTTTATGCGTTTTTACGTCAAATTCAGGCAC
GCGTAGAAAATTCTTCTGATATCTGGTTTCTCATGGCAAGTCGCGATTTGTCAGGAAAACGTTGGTGTTTAACTGCGCAG
ATTAAAAATCATCATCTATGTGATTGTTTGGCCCTCCAAGGTTGTCCTCCTCATGTTTCTGCACATTTTTATTATCCTGC
TTTCTCGGACACCATGTTGATTAGCAAGCGTTATTATCCTCTGGAACTCACGCGGTTAAGTGGCATTCGTAACACCGCGT
CCACAGCCTGTTTTGTGTTGCAAGCCAATCATCAACGAACCCTCTTTTCGTTTTTTAATGTGGGCAGTTTGAAATTAAAA
GATAACCAATCCTTAAGTGCTTGTGTAAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

57.988

97.688

0.566