Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   J5A60_RS06485 Genome accession   NZ_CP072381
Coordinates   1362835..1363137 (-) Length   100 a.a.
NCBI ID   WP_212509843.1    Uniprot ID   -
Organism   Aggregatibacter sp. oral taxon 513 strain W11186     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1357835..1368137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5A60_RS06470 (J5A60_06470) - 1358502..1358942 (+) 441 WP_212509840.1 DNA polymerase III subunit psi -
  J5A60_RS06475 (J5A60_06475) rimI 1358955..1359398 (+) 444 WP_212509841.1 ribosomal protein S18-alanine N-acetyltransferase -
  J5A60_RS06480 (J5A60_06480) recC 1359401..1362796 (-) 3396 WP_212509842.1 exodeoxyribonuclease V subunit gamma -
  J5A60_RS06485 (J5A60_06485) comQ 1362835..1363137 (-) 303 WP_212509843.1 DUF5374 domain-containing protein Machinery gene
  J5A60_RS06490 (J5A60_06490) - 1363112..1363807 (-) 696 WP_212509844.1 DUF2572 family protein -
  J5A60_RS06495 (J5A60_06495) - 1363804..1364547 (-) 744 WP_371817614.1 hypothetical protein -
  J5A60_RS06500 (J5A60_06500) comN 1364534..1365055 (-) 522 WP_212509845.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J5A60_RS06520 (J5A60_06520) pal 1365749..1366201 (-) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  J5A60_RS06525 (J5A60_06525) tolB 1366216..1367496 (-) 1281 WP_212509846.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11558.50 Da        Isoelectric Point: 10.8632

>NTDB_id=552243 J5A60_RS06485 WP_212509843.1 1362835..1363137(-) (comQ) [Aggregatibacter sp. oral taxon 513 strain W11186]
MILSFPKINQKGMSLVSLLVALSVFSGLFLTFNQWGNLQRKSAVEIYQRFQAIQIVENQHQRRFLGLPCESNVLQNQIRF
RVTCTQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=552243 J5A60_RS06485 WP_212509843.1 1362835..1363137(-) (comQ) [Aggregatibacter sp. oral taxon 513 strain W11186]
ATGATTTTGTCGTTCCCAAAAATTAATCAGAAAGGCATGAGCTTGGTGTCCTTGTTGGTGGCTTTATCTGTATTTAGCGG
GCTTTTCCTCACGTTTAACCAATGGGGAAATTTACAACGCAAAAGTGCGGTGGAAATTTATCAACGTTTTCAAGCTATTC
AAATTGTTGAGAATCAACATCAACGGCGTTTTCTTGGGTTACCTTGTGAATCGAACGTGCTACAGAATCAAATTCGTTTT
CGCGTTACGTGCACGCAAAATCAGGTCACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.102

98

0.54