Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   J5A60_RS04135 Genome accession   NZ_CP072381
Coordinates   842161..844590 (-) Length   809 a.a.
NCBI ID   WP_212510665.1    Uniprot ID   -
Organism   Aggregatibacter sp. oral taxon 513 strain W11186     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 837161..849590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5A60_RS04115 (J5A60_04115) kdsB 838408..839181 (-) 774 WP_006717922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J5A60_RS04120 (J5A60_04120) - 839183..839362 (-) 180 WP_006717924.1 Trm112 family protein -
  J5A60_RS04125 (J5A60_04125) lpxK 839369..840349 (-) 981 WP_212510663.1 tetraacyldisaccharide 4'-kinase -
  J5A60_RS04130 (J5A60_04130) msbA 840368..842116 (-) 1749 WP_212510664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  J5A60_RS04135 (J5A60_04135) rec2 842161..844590 (-) 2430 WP_212510665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J5A60_RS04140 (J5A60_04140) dksA 844884..845321 (+) 438 WP_006717934.1 RNA polymerase-binding protein DksA -
  J5A60_RS04145 (J5A60_04145) pcnB 845605..846894 (+) 1290 WP_212510666.1 polynucleotide adenylyltransferase PcnB -
  J5A60_RS04150 (J5A60_04150) folK 846887..847393 (+) 507 WP_212510667.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 91941.46 Da        Isoelectric Point: 9.4099

>NTDB_id=552241 J5A60_RS04135 WP_212510665.1 842161..844590(-) (rec2) [Aggregatibacter sp. oral taxon 513 strain W11186]
MGVSLDKFAGSLIVSSITLVFLPESFLVSWQTALYLSLLLCPLILLARRLSCHKTKYSLLWLLLFTLNLAYAHQPAIQLL
TQADDIARLPKTIHTEFTVEEILHQQQYQTVVIRVKLADNQPEQRLYANWKLKQNVNIGERYVGELRLRPISSRLNKDGF
DRQQWYFSKRITAWAEVKSAVKIDHVFSWRQSALHHALKQTEPLSQQGLLLALGFGERAWLENATWQIYQKTNTAHLIAI
SGLHIGLAMMLGFALARLLQFTFPTHYITPTFPIFCGMILALLYSQLAGLAIPTLRAMIALALLYAIQHLRLHWTVWQLL
LRVVALLIFIDPLMLLSTSFWLSVGAVTCLIIWYQCFPLSLLHWRGKSLSHSLWGKVRYVFGLFHLQLGLLWLFTPIQLF
FFNGISLNSFIANLIAVPLYSFILVPLVLFAVLTQGSWNTWWLANDLAEKITALLAPLQDHWLAISLPHSLWITLVLTCL
FLGLLHYVYKPQKPLSSTLELAKLTRLKGFHLAAERTLSFPLQKTIYGLGCGLIVFCGTTLAYHYLSRPNWQLDTLDVGQ
GLATLIVKDGKGMLYDTGSSWESGSMVQLEILPYLQRQGIQLEWLILSHDDNDHSGGARAMLSAYPDIQLTTASQKRYGE
KNTEENDRTFCLAGKQWTWQGLYFTVLSPNNIVPRAENPDSCTLLLTDGKYNILLTGDADLSVEYKILPKLNKIHVLQVG
HHGSKTSTGEALVHHTRPDIALISSGRWNPWHFPNNEVMARLKQQGTQSYNTAETGQISLLFHENKIEIQTARAEFSPWY
RRLIGLKGK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=552241 J5A60_RS04135 WP_212510665.1 842161..844590(-) (rec2) [Aggregatibacter sp. oral taxon 513 strain W11186]
GTGGGTGTTTCGTTAGATAAATTTGCGGGAAGTTTAATTGTAAGCAGTATCACTTTGGTGTTTTTACCCGAGTCGTTTTT
AGTCTCTTGGCAAACAGCACTTTATTTATCCCTTCTTTTATGTCCGCTCATTTTGCTTGCCCGACGTTTATCCTGTCATA
AAACGAAATACTCGCTTCTTTGGTTGCTTTTGTTCACGCTCAATCTGGCTTATGCGCATCAGCCAGCAATACAGTTGCTA
ACACAAGCGGATGATATTGCCCGTTTGCCGAAAACCATTCATACCGAATTTACCGTGGAAGAGATCCTGCATCAGCAACA
ATATCAAACCGTAGTTATCCGTGTGAAACTTGCGGATAATCAGCCAGAACAACGTCTTTACGCCAATTGGAAACTTAAAC
AAAACGTGAATATTGGCGAACGTTATGTGGGAGAGTTGCGCCTTCGCCCTATTTCCTCACGGCTCAATAAAGACGGGTTT
GATCGCCAACAATGGTACTTCAGCAAACGCATCACTGCGTGGGCAGAAGTGAAAAGTGCGGTCAAAATAGATCACGTTTT
TTCATGGCGGCAAAGCGCACTTCATCATGCGCTCAAGCAAACAGAACCGTTATCTCAACAAGGGTTGTTATTAGCACTTG
GTTTTGGCGAACGGGCATGGCTTGAAAACGCCACATGGCAAATTTATCAAAAAACCAATACGGCACACTTGATTGCTATT
TCAGGATTACATATCGGTCTGGCGATGATGTTAGGCTTTGCCTTGGCGCGCTTACTCCAATTTACGTTTCCAACCCATTA
CATCACCCCAACCTTTCCGATTTTCTGCGGCATGATTTTAGCCCTGCTTTATAGTCAACTTGCAGGGCTTGCCATTCCTA
CGTTACGTGCCATGATTGCCCTCGCTTTACTCTACGCTATTCAGCATTTAAGACTGCATTGGACGGTGTGGCAACTGTTA
TTGCGAGTGGTCGCACTACTGATTTTTATCGATCCGCTCATGTTGCTTTCCACCAGTTTTTGGCTATCTGTCGGCGCGGT
CACCTGTTTGATTATTTGGTATCAATGTTTTCCGCTGTCCTTATTACACTGGCGTGGAAAATCACTCAGCCACTCGCTTT
GGGGAAAAGTGCGGTACGTTTTCGGTTTATTTCATTTGCAACTTGGTTTGCTTTGGTTATTCACGCCGATTCAATTATTC
TTTTTCAACGGCATTTCCTTAAACAGTTTTATTGCTAATCTTATTGCCGTGCCACTTTATAGCTTCATTTTAGTGCCATT
GGTGCTGTTTGCTGTGCTCACCCAAGGCAGTTGGAACACCTGGTGGCTTGCCAATGATCTGGCAGAAAAAATCACCGCAC
TTTTAGCCCCGTTGCAGGATCATTGGCTGGCTATTTCTCTTCCCCATAGTTTATGGATAACACTCGTTTTAACCTGCCTG
TTTTTAGGCTTGCTTCATTACGTTTATAAACCCCAGAAACCTCTTTCTTCTACATTGGAATTAGCAAAACTCACTCGTTT
AAAGGGATTTCACCTCGCTGCTGAACGCACCTTAAGTTTTCCCTTACAAAAGACAATTTACGGGTTAGGTTGCGGATTGA
TTGTATTTTGCGGCACCACATTGGCTTACCACTACCTTTCCCGCCCAAATTGGCAATTGGATACCTTAGATGTGGGGCAA
GGGTTAGCGACATTGATCGTGAAAGATGGCAAAGGCATGCTGTACGACACCGGCTCAAGTTGGGAAAGCGGCAGTATGGT
GCAGTTAGAAATTCTGCCTTATTTACAGCGACAAGGCATTCAGCTGGAATGGTTGATTTTAAGTCATGATGACAACGATC
ATTCGGGCGGTGCCCGTGCGATGTTGAGCGCTTATCCCGACATTCAACTGACCACCGCTTCGCAAAAACGTTATGGCGAA
AAAAACACGGAAGAAAACGACCGCACTTTTTGCCTTGCCGGTAAACAATGGACATGGCAAGGATTATATTTTACTGTGCT
CTCCCCAAACAACATCGTGCCCCGTGCGGAAAATCCCGATTCCTGCACACTGTTGTTAACGGACGGCAAATACAATATTT
TACTGACCGGTGACGCGGATCTCAGCGTGGAATACAAAATTCTGCCAAAGCTGAATAAAATCCATGTACTACAAGTGGGA
CACCACGGCAGTAAAACCTCGACAGGAGAAGCATTGGTACATCACACACGGCCGGACATTGCGCTGATTTCCAGCGGGCG
TTGGAATCCCTGGCACTTTCCAAACAACGAGGTTATGGCAAGGCTAAAGCAGCAAGGCACACAAAGTTACAATACGGCAG
AAACAGGTCAAATCAGTTTGTTATTTCATGAAAATAAAATAGAAATTCAAACTGCTCGGGCTGAATTTTCGCCATGGTAT
CGCAGATTAATTGGCTTGAAGGGCAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)

Competence protein (Competence)

(213-485)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.679

96.91

0.511