Detailed information NTG0552151

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: J4864_RS07220
• Genome accession: NZ_CP072358
• Coordinates: 204333..205733 (-)
• Length: 466 a.a.
• NCBI ID: WP_211815124.1
• Uniprot ID: -
• Organism: Prevotella multiformis strain F0096
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 199333..210733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4864_RS07205 (J4864_07205)	-	201455..202285 (-)	831	WP_211815121.1	glycoside hydrolase family 25 protein	-
J4864_RS07210 (J4864_07210)	-	203022..203441 (+)	420	WP_211815122.1	hypothetical protein	-
J4864_RS07215 (J4864_07215)	-	203589..204269 (+)	681	WP_211815123.1	GDSL-type esterase/lipase family protein	-
J4864_RS07220 (J4864_07220)	radA	204333..205733 (-)	1401	WP_211815124.1	DNA repair protein RadA	Machinery gene
J4864_RS07225 (J4864_07225)	-	205797..206708 (+)	912	WP_211815125.1	ABC transporter substrate-binding protein	-
J4864_RS07230 (J4864_07230)	-	206746..208920 (+)	2175	WP_211815126.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 50755.22 Da
• Isoelectric Point: 6.6849

>NTDB_id=552151 J4864_RS07220 WP_211815124.1 204333..205733(-) (radA) [Prevotella multiformis strain F0096]
MAKDKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIAADTGTQAARHAATSLCNTGTGGAVSALANKPQRLRDVSSHD
EPRLDLHDGELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQRVLYVSGEESPHQIKMRAERITKDIAENVIIL
SETSLEHIFEHIRDVQPDLVVVDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVILIGHINKEGSIAGPKILE
HIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSNPSELLLAEDHEGLSGVAISSTIEGIRPFLVET
QALVSSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGW
CMCGEVGLSGEVRPVSRIEQRIAEAEKLGFSHIILPKYNLSGLKGKYKIQLHPVRKVEEALRALFG

Nucleotide

• Length: 1401 bp

>NTDB_id=552151 J4864_RS07220 WP_211815124.1 204333..205733(-) (radA) [Prevotella multiformis strain F0096]
ATGGCAAAAGACAAAATAGCTTATGTCTGCAGCAACTGCGGACAGGAAAGTGCGAAATGGATAGGCAAATGCCCCAGCTG
CGGGCAATGGAACACATTTAAGGAAATCCGTATTGCCGCCGATACAGGCACCCAGGCAGCCCGGCATGCCGCTACGTCGC
TGTGCAACACGGGGACAGGCGGTGCGGTCTCTGCGCTGGCCAATAAACCCCAGCGGCTGCGTGACGTGTCTTCGCACGAT
GAACCGCGGCTGGACCTGCATGACGGAGAGCTGAACAGAGTGCTGGGGGGAGGACTGGTTCCGGGAAGCATCGTTTTGCT
GGGCGGCGAACCCGGTATCGGAAAGAGTACGCTGACCCTCCAGACAATCCTCCACATGACGCAGCGTGTACTCTATGTCA
GTGGCGAGGAAAGCCCCCATCAGATAAAGATGCGTGCCGAACGCATAACGAAGGATATTGCTGAAAACGTCATCATCCTG
TCAGAAACATCACTTGAACATATCTTCGAGCACATCCGGGACGTACAGCCGGATCTGGTGGTCGTGGATTCCATCCAGAC
CATCTCAACAGAAGATGTGGACAGCAGTCCGGGGAGCATCACGCAGGTACGTGAATGTGCGTCCGCACTGTTGCGCTTTG
CCAAGACGAGCGGTGTGCCCGTGATACTCATCGGGCATATCAACAAGGAAGGAAGCATTGCGGGGCCGAAGATACTGGAG
CATATCGTTGATACCGTCATTCAGTTTGAAGGCGACCAGCATTATATGTATCGCATACTCCGCAGCATCAAGAACCGTTT
CGGTTCGACTTCCGAGTTAGGTATTTATGAAATGGAGCAGCAGGGATTACGACAGGTGAGCAATCCTTCCGAACTGCTGC
TTGCAGAAGACCATGAGGGACTGTCAGGGGTGGCTATTTCAAGTACTATTGAAGGAATCAGGCCTTTTCTTGTTGAGACA
CAGGCTCTTGTATCTTCTGCTGCATACGGAACTCCACAACGTTCAGCAACGGGATTTGACCAGCGCAGACTGAACATGCT
GCTTGCCGTACTGGAAAAGCGGGTGGGCTTCAAACTTATGCAGAAAGACGTGTTCCTGAACATTGCCGGCGGACTCCGTG
TGACGGACATGGCCATGGACTTGAGTGTCATAGCCGCCGTCCTCTCATCGAATGTTGACACACCGATAGAACAAGGATGG
TGTATGTGCGGTGAGGTGGGACTTAGCGGTGAGGTGCGTCCGGTAAGCCGGATAGAGCAGCGTATAGCTGAAGCCGAAAA
GCTGGGGTTCAGTCATATCATTCTCCCGAAGTACAACCTGTCTGGGCTTAAGGGGAAATACAAGATACAGCTCCATCCCG
TCAGAAAGGTGGAAGAAGCTCTCCGGGCATTGTTCGGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (88-231)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (353-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.408	100	0.489
radA	Streptococcus mitis SK321	45.182	100	0.453
radA	Streptococcus mitis NCTC 12261	45.182	100	0.453
radA	Streptococcus pneumoniae Rx1	45.182	100	0.453
radA	Streptococcus pneumoniae D39	45.182	100	0.453
radA	Streptococcus pneumoniae R6	45.182	100	0.453
radA	Streptococcus pneumoniae TIGR4	45.182	100	0.453