Detailed information NTG0552138

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LUV29_RS01680
• Genome accession: NZ_CP089592
• Coordinates: 309030..310151 (+)
• Length: 373 a.a.
• NCBI ID: WP_003246478.1
• Uniprot ID: O34327
• Organism: Bacillus subtilis strain Bsi
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 304030..315151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUV29_RS01655 (LUV29_01655)	ycdA	304038..305102 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
LUV29_RS01660 (LUV29_01660)	-	305125..305256 (-)	132	WP_003246334.1	hypothetical protein	-
LUV29_RS01665 (LUV29_01665)	ycdB	305430..306848 (+)	1419	WP_003246352.1	YcdB/YcdC domain-containing protein	-
LUV29_RS01670 (LUV29_01670)	ycdC	307035..308396 (+)	1362	WP_010886397.1	YcdB/YcdC domain-containing protein	-
LUV29_RS01675 (LUV29_01675)	cwlK	308404..308907 (-)	504	WP_009966473.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
LUV29_RS01680 (LUV29_01680)	rapF	309030..310151 (+)	1122	WP_003246478.1	response regulator aspartate phosphatase RapJ	Regulator
LUV29_RS01685 (LUV29_01685)	ycdF	310258..311034 (+)	777	WP_003246415.1	SDR family oxidoreductase	-
LUV29_RS01690 (LUV29_01690)	ycdG	311059..312744 (+)	1686	WP_003234736.1	glycoside hydrolase family 13 protein	-
LUV29_RS01695 (LUV29_01695)	znuA	312932..313891 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
LUV29_RS01700 (LUV29_01700)	znuC	313947..314642 (+)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44414.31 Da
• Isoelectric Point: 4.8371

>NTDB_id=552138 LUV29_RS01680 WP_003246478.1 309030..310151(+) (rapF) [Bacillus subtilis strain Bsi]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=552138 LUV29_RS01680 WP_003246478.1 309030..310151(+) (rapF) [Bacillus subtilis strain Bsi]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATATGATTTAGAAGATATGGAAGAGAATCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGATACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGAACATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCTGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGTT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

3D structure

• PDB: 4GYO

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405