Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A7A1_RS02980 Genome accession   NC_019896
Coordinates   583152..583874 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578152..588874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS02955 (A7A1_1176) degS 578463..579620 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  A7A1_RS02960 (A7A1_1177) degU 579703..580392 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A7A1_RS02965 (A7A1_1178) fakBA 580490..581335 (+) 846 WP_003244125.1 DegV family protein -
  A7A1_RS02970 (A7A1_1179) comFA 581441..582832 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  A7A1_RS02975 (A7A1_1180) comFB 582892..583188 (+) 297 WP_003227989.1 late competence protein ComFB -
  A7A1_RS02980 (A7A1_1181) comFC 583152..583874 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  A7A1_RS02985 (A7A1_1182) yvyF 583948..584367 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  A7A1_RS02990 (A7A1_1183) flgM 584448..584714 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  A7A1_RS02995 (A7A1_1184) flgN 584730..585212 (+) 483 WP_003227999.1 flagellar protein FlgN -
  A7A1_RS03000 (A7A1_1185) flgK 585231..586754 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  A7A1_RS03005 (A7A1_1186) flgL 586765..587661 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  A7A1_RS03010 (A7A1_1187) yviE 587708..588283 (+) 576 WP_003243053.1 DUF6470 family protein -
  A7A1_RS03015 (A7A1_1188) fliW 588304..588735 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=55212 A7A1_RS02980 WP_003227991.1 583152..583874(+) (comFC) [Bacillus subtilis subsp. subtilis str. BSP1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=55212 A7A1_RS02980 WP_003227991.1 583152..583874(+) (comFC) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment