Detailed information NTG0552066

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: J4854_RS09555
• Genome accession: NZ_CP072329
• Coordinates: 1972201..1973535 (-)
• Length: 444 a.a.
• NCBI ID: WP_244967050.1
• Uniprot ID: -
• Organism: Streptococcus lactarius strain CCUG 66490
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1967201..1978535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4854_RS09550 (J4854_09550)	-	1971567..1972061 (-)	495	WP_187539425.1	beta-class carbonic anhydrase	-
J4854_RS09555 (J4854_09555)	radA	1972201..1973535 (-)	1335	WP_244967050.1	DNA repair protein RadA	Machinery gene
J4854_RS09560 (J4854_09560)	-	1973572..1974018 (-)	447	WP_023919767.1	dUTP diphosphatase	-
J4854_RS09565 (J4854_09565)	-	1974439..1976232 (+)	1794	WP_200772809.1	Ig-like domain-containing protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 48374.57 Da
• Isoelectric Point: 5.5691

>NTDB_id=552066 J4854_RS09555 WP_244967050.1 1972201..1973535(-) (radA) [Streptococcus lactarius strain CCUG 66490]
MCQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVHRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVEKIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEVRRVNRIEQR
INEAAKLGFTKIYVPKNSLTGITTPSEIQVVGVTTLSEVLKKVF

Nucleotide

• Length: 1335 bp

>NTDB_id=552066 J4854_RS09555 WP_244967050.1 1972201..1973535(-) (radA) [Streptococcus lactarius strain CCUG 66490]
ATTTGTCAAAATTGTGCCTACAATTCACCCAAATACCTAGGGCGCTGTCCCAACTGTGGTTCTTGGTCTTCCTTTGTCGA
GGAGGTAGAGGTTGCAGAGGTCAAGAATGCACGGGTGTCCTTGACAGGTGAAAAGACCAAACCCATGAAACTGGCTGAGG
TGACCTCCATCAATGTCCATCGAACTAAGACCGAGATGGAGGAATTTAACCGTGTGCTTGGAGGCGGTGTCGTCCCAGGA
AGTCTCGTCCTCATCGGGGGAGACCCTGGGATTGGAAAATCAACCCTGCTCCTGCAAGTATCGACCCAACTGTCTCAAGT
GGGAACGGTCCTCTATGTTAGTGGCGAGGAGTCAGCCCAGCAGATCAAACTTCGGGCAGAGCGTTTGGGGGATATTGACA
GTGAGTTTTACCTCTATGCTGAGACCAATATGCAGAGCGTGCGAGCAGAGGTAGAGAAAATCCAGCCTGACTTTCTCATC
ATCGACTCTATCCAGACCATTATGTCTCCTGAGATTTCAGGGGTACAAGGGTCGGTTTCTCAGGTGCGGGAAGTGACAGC
TGAACTCATGCAGCTGGCCAAAACCAATAACATTGCCATCTTTATCGTTGGACACGTAACAAAGGAAGGAACCTTGGCAG
GTCCTCGGATGCTGGAACACATGGTGGATACGGTGCTTTACTTTGAAGGGGAACGTCACCATACCTTCCGGATCCTGAGA
GCGGTCAAGAACCGTTTTGGCTCGACCAATGAGATTGGGATCTTTGAGATGCAGTCAGGTGGACTGGTCGAAGTCCTCAA
TCCGAGTCAAGTTTTCCTAGAAGAGCGTTTAGACGGTGCGACTGGTTCGTCCATCGTGGTGACCATGGAGGGAACCCGTC
CGATTCTTGCAGAAGTGCAGGCCTTGGTGACACCGACCATGTTTGGGAATGCCAAGCGGACGACAACGGGGCTTGATTTT
AATCGAGCTAGTTTGATTATGGCTGTTTTGGAGAAACGGGCAGGTCTCTTGCTCCAAAATCAGGATGCCTACCTTAAGTC
TGCAGGTGGTGTCAAATTAGATGAACCTGCGATTGACTTAGCGGTTGCCGTTGCCATTGCCTCGAGCTATAAGGACAAGC
CAACCAACCCGCAGGAGTGTTTTGTTGGAGAGTTGGGCTTGACAGGAGAGGTCCGTCGGGTCAATCGGATTGAGCAGCGG
ATCAATGAAGCGGCTAAGCTCGGTTTCACAAAAATCTATGTACCGAAAAATTCACTGACAGGGATCACGACACCATCCGA
AATTCAAGTGGTTGGTGTGACGACTCTGAGTGAAGTCTTAAAGAAAGTATTTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (352-417)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (2-27)

• AAA domain (AAA_25) (55-210)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	97.748	100	0.977
radA	Streptococcus pneumoniae D39	97.748	100	0.977
radA	Streptococcus pneumoniae R6	97.748	100	0.977
radA	Streptococcus pneumoniae TIGR4	97.748	100	0.977
radA	Streptococcus mitis SK321	97.748	100	0.977
radA	Streptococcus mitis NCTC 12261	97.523	100	0.975
radA	Bacillus subtilis subsp. subtilis str. 168	62.697	100	0.628