Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J4854_RS08530 Genome accession   NZ_CP072329
Coordinates   1709566..1711326 (-) Length   586 a.a.
NCBI ID   WP_200772469.1    Uniprot ID   A0A9X1BAX7
Organism   Streptococcus lactarius strain CCUG 66490     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704566..1716326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS08505 (J4854_08505) - 1704862..1705602 (-) 741 WP_200772474.1 MerR family transcriptional regulator -
  J4854_RS08510 (J4854_08510) manA 1705728..1706672 (-) 945 WP_200772473.1 mannose-6-phosphate isomerase, class I -
  J4854_RS08515 (J4854_08515) queG 1706787..1707911 (+) 1125 WP_200772472.1 tRNA epoxyqueuosine(34) reductase QueG -
  J4854_RS08520 (J4854_08520) - 1707947..1708573 (-) 627 WP_212569540.1 GNAT family N-acetyltransferase -
  J4854_RS08525 (J4854_08525) - 1708657..1709172 (-) 516 WP_200772470.1 phosphatase PAP2 family protein -
  J4854_RS08530 (J4854_08530) rcrQ 1709566..1711326 (-) 1761 WP_200772469.1 ABC transporter ATP-binding protein Regulator
  J4854_RS08535 (J4854_08535) rcrP 1711319..1713121 (-) 1803 WP_200772468.1 ABC transporter ATP-binding protein Regulator
  J4854_RS08540 (J4854_08540) - 1713118..1713564 (-) 447 WP_200772467.1 MarR family winged helix-turn-helix transcriptional regulator -
  J4854_RS08545 (J4854_08545) - 1713852..1714262 (-) 411 WP_200772466.1 peptide deformylase -
  J4854_RS08550 (J4854_08550) scrK 1714358..1715257 (-) 900 WP_200772465.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65173.85 Da        Isoelectric Point: 5.3284

>NTDB_id=552063 J4854_RS08530 WP_200772469.1 1709566..1711326(-) (rcrQ) [Streptococcus lactarius strain CCUG 66490]
MHKTKQTSSLWSQLSPYLKGFHLFFVIAILFSIVSSVITVIGPDKLKEITDTITKGMGGAIDIDKITSIALTLAVLYGVG
ALVSYSSSFIISTMIQRFAERLRNAIAEKINRVPLQYFDSHEQGDTLSRVTNDVDLMTQSFNQSLVQMVSSIVLLVGSIF
MMFKTDWHLALTAILSVFGGFGLSSIIMVKSQPLFKQQQANLAKVSGYVEEIYSGHNVVISYNGRHQAKEQFDAINQELY
HSMWKSQFFSGIMMPLMQFVGNFGYVMVCIVGAVLTINGDITIGTIVAFMTYVRIFTQPIGQMAQGITQLQSASAAMGRV
FEFLDEEEMEDESQKTRQLETPKGHVSFEHVRFGYSPDKTIIHDFTAEAKPGQKVAIVGPTGAGKTTLVNLLMRFYDIQA
GKIAIDGEDTKTMSREEVHDAFSMVLQDTWLFEGTIRENLVFNQTDISDEAVEAATRAVGVHHFIRTLPNGYDTVLDDSV
TLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQ
GNHQELMSQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=552063 J4854_RS08530 WP_200772469.1 1709566..1711326(-) (rcrQ) [Streptococcus lactarius strain CCUG 66490]
ATGCATAAGACAAAACAAACATCATCTCTTTGGAGCCAACTTTCTCCCTATTTGAAGGGCTTCCATCTATTTTTTGTGAT
TGCCATCCTCTTTTCGATCGTATCTAGTGTGATCACGGTTATTGGACCAGATAAATTAAAAGAAATCACGGATACCATCA
CAAAAGGGATGGGAGGCGCCATTGATATTGACAAGATCACTTCGATTGCTCTGACCTTAGCCGTCCTTTATGGAGTAGGG
GCCTTGGTCTCATACAGCAGTAGTTTTATTATCTCCACCATGATTCAGCGTTTCGCAGAACGCTTGCGCAATGCCATCGC
TGAGAAGATCAATCGGGTACCCCTCCAATATTTTGATAGCCATGAACAAGGAGATACCTTGTCTCGTGTGACCAATGACG
TGGATTTGATGACCCAATCTTTTAACCAAAGTTTGGTGCAAATGGTTTCTTCCATCGTCTTATTGGTTGGATCGATCTTT
ATGATGTTTAAGACGGATTGGCATCTTGCCCTGACAGCCATCCTCTCTGTTTTTGGAGGGTTTGGCTTATCTAGTATCAT
TATGGTCAAGAGCCAGCCTCTCTTTAAGCAACAGCAAGCCAATCTTGCCAAAGTTTCAGGCTATGTAGAAGAAATCTATA
GTGGGCACAATGTAGTCATTTCCTATAATGGTCGTCATCAAGCCAAAGAGCAATTTGATGCCATCAACCAAGAGTTGTAC
CATAGCATGTGGAAATCCCAATTCTTCTCTGGGATCATGATGCCCTTGATGCAGTTTGTAGGGAACTTCGGCTATGTCAT
GGTCTGTATCGTTGGGGCTGTCCTTACTATCAATGGAGACATTACCATCGGGACCATTGTTGCCTTTATGACCTATGTTC
GCATCTTTACCCAACCAATTGGTCAAATGGCTCAAGGAATTACCCAATTGCAATCAGCCAGTGCTGCCATGGGGCGGGTC
TTTGAATTCTTAGATGAAGAAGAAATGGAAGACGAATCTCAAAAAACGCGCCAATTGGAAACGCCAAAAGGTCATGTTAG
CTTTGAGCATGTGCGCTTTGGCTATTCACCAGATAAGACCATTATTCATGATTTTACTGCTGAAGCGAAACCTGGACAGA
AAGTGGCCATTGTTGGTCCGACAGGCGCAGGTAAGACCACCTTGGTCAATCTTTTGATGCGTTTTTATGACATTCAAGCT
GGTAAAATTGCTATCGATGGTGAGGATACCAAAACCATGAGCCGCGAAGAAGTTCATGATGCCTTCTCCATGGTCTTACA
AGATACCTGGCTCTTTGAGGGCACCATTCGGGAAAATCTTGTTTTCAATCAAACCGATATTTCAGATGAAGCCGTCGAAG
CAGCAACGCGAGCGGTTGGGGTCCATCACTTTATCCGGACCTTGCCGAATGGCTATGATACCGTGCTAGATGATTCGGTC
ACCTTGTCTGTCGGTCAGAAGCAACTCTTGACCATTGCGCGTGCCCTCTTGAAGGATGCTCCACTCCTCATCTTGGATGA
AGCAACCTCATCTGTCGATACCCGTACAGAAGAGTTGATTCAAAAAGCCATGGACAAACTTATGGAAGGCCGGACCTCTT
TTGTCATTGCCCATCGCTTGTCCACTATCCGCAATGCGGATTTGATCCTCGTGATGAAAGATGGAAATATTATCGAGCAA
GGAAACCACCAAGAACTCATGAGCCAAAATGGCTTCTATGCTGATCTCTACAATAGCCAATTCACAGAAGAAGTAGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

77.453

99.147

0.768