Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J4854_RS08535 Genome accession   NZ_CP072329
Coordinates   1711319..1713121 (-) Length   600 a.a.
NCBI ID   WP_200772468.1    Uniprot ID   A0A9X1BC24
Organism   Streptococcus lactarius strain CCUG 66490     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706319..1718121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS08515 (J4854_08515) queG 1706787..1707911 (+) 1125 WP_200772472.1 tRNA epoxyqueuosine(34) reductase QueG -
  J4854_RS08520 (J4854_08520) - 1707947..1708573 (-) 627 WP_212569540.1 GNAT family N-acetyltransferase -
  J4854_RS08525 (J4854_08525) - 1708657..1709172 (-) 516 WP_200772470.1 phosphatase PAP2 family protein -
  J4854_RS08530 (J4854_08530) rcrQ 1709566..1711326 (-) 1761 WP_200772469.1 ABC transporter ATP-binding protein Regulator
  J4854_RS08535 (J4854_08535) rcrP 1711319..1713121 (-) 1803 WP_200772468.1 ABC transporter ATP-binding protein Regulator
  J4854_RS08540 (J4854_08540) - 1713118..1713564 (-) 447 WP_200772467.1 MarR family winged helix-turn-helix transcriptional regulator -
  J4854_RS08545 (J4854_08545) - 1713852..1714262 (-) 411 WP_200772466.1 peptide deformylase -
  J4854_RS08550 (J4854_08550) scrK 1714358..1715257 (-) 900 WP_200772465.1 fructokinase ScrK -
  J4854_RS08555 (J4854_08555) - 1715414..1717333 (-) 1920 WP_200772464.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66518.45 Da        Isoelectric Point: 9.5567

>NTDB_id=552064 J4854_RS08535 WP_200772468.1 1711319..1713121(-) (rcrP) [Streptococcus lactarius strain CCUG 66490]
MIKIFRRLTAKEWGMIALSTVFICLAVWMDLKTPEYLSDITTLLAKKGTKVSDIMEPGSKMLLFSFGSFLMAVFVGFLAS
RVAASFTTRLRGEIFHQVMDYSDAEIKKFSVPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSGAWTTS
VGVAVLIVLLLLSVLVLIAFPRQQKVQGLTDALNATTRESLTGVRVVRAYNAEAYQNEKFQAENKGLTRLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGAHLINDIAMPKDPTKIFTSPALADRTKVFSDMITFSSYAMQVVIGFMMMVAILIILPRAL
VSAKRINQVLALDPSVAFPSESKTRTDLEGTVEFQDVSFRYGRTSRAVIEHVTFSAQKGQTVAFIGSTGSGKSTLVNLIP
RFYDATEGKILVDGVNVKDYSHQDLNNKVGYIPQKAVLFSGTIRSNMEFGESSQGKLEDEAIWKALELAQAKEFVATKEK
GLDTEVAQGGTNFSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQALKEELANTTRLIVAQRISTIMDADLI
LVLDQGKVVGQGTHKELLETNEVYQEIAYSQLSKEELEHA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=552064 J4854_RS08535 WP_200772468.1 1711319..1713121(-) (rcrP) [Streptococcus lactarius strain CCUG 66490]
ATGATCAAGATATTTCGGCGCTTAACGGCCAAAGAATGGGGCATGATTGCCCTTAGTACAGTCTTTATCTGTCTAGCTGT
TTGGATGGATTTAAAGACCCCTGAATACCTATCTGATATCACGACTCTCTTAGCAAAGAAGGGGACAAAAGTTTCTGACA
TCATGGAGCCTGGGAGTAAGATGTTGCTCTTCTCCTTTGGAAGTTTTTTGATGGCGGTTTTTGTGGGCTTTCTAGCTTCA
CGAGTCGCTGCCAGCTTTACAACACGACTGCGAGGAGAGATTTTCCACCAAGTGATGGATTACTCTGATGCAGAGATCAA
GAAATTCTCTGTGCCTTCTCTCTTGACACGGACGACCAATGATTTGACCCAGTTACAAATCATGATTGTCATGGGGATGC
AGGTGGTGACGCGTGGTCCTATTATGGCCGTTTGGGCTTTGACAAAGATTTGGGGCAAGAGCGGTGCTTGGACAACGTCT
GTTGGTGTGGCGGTCTTAATCGTCTTGCTTCTCCTCTCTGTTCTGGTTCTGATTGCCTTCCCTCGCCAGCAAAAAGTGCA
AGGCTTGACGGATGCCTTGAATGCCACAACACGGGAGAGTTTGACAGGGGTGCGGGTGGTTCGTGCATACAATGCGGAAG
CTTATCAAAATGAAAAATTCCAAGCTGAAAATAAGGGTTTAACCCGCCTCAATCTCTTTGTTTATCGGTTGATGTCTCTG
ATGAACCCAGTTATGACAGTGGTTTCAAGTGGCTTGACCCTAGCTATCTACTGGATCGGGGCGCACTTGATCAATGATAT
CGCCATGCCAAAAGATCCTACCAAAATCTTCACCAGTCCAGCTTTAGCGGATCGAACCAAGGTCTTCTCAGATATGATCA
CCTTCTCCTCATATGCCATGCAAGTTGTCATTGGCTTCATGATGATGGTGGCCATCTTGATTATCCTTCCTCGTGCCTTG
GTATCTGCGAAACGGATTAACCAGGTCTTAGCTCTAGATCCCTCTGTAGCCTTTCCAAGTGAATCAAAGACAAGAACCGA
TCTTGAAGGTACAGTAGAATTTCAAGACGTGTCCTTCCGATATGGGCGGACTTCTCGTGCGGTGATTGAGCATGTGACCT
TTTCAGCTCAGAAGGGCCAAACTGTTGCCTTCATTGGATCAACCGGTTCAGGGAAGTCCACTTTGGTCAACTTAATTCCG
CGTTTTTACGATGCTACAGAAGGAAAGATTCTTGTGGATGGCGTCAATGTCAAGGACTATAGCCACCAAGATTTGAACAA
TAAAGTCGGCTACATTCCTCAAAAAGCAGTGCTCTTTAGCGGTACGATTCGCTCCAATATGGAATTTGGAGAAAGTAGTC
AAGGAAAATTAGAGGATGAAGCCATCTGGAAGGCTCTTGAATTGGCCCAAGCTAAAGAGTTTGTGGCCACAAAAGAAAAG
GGCTTGGATACAGAAGTAGCACAAGGAGGAACCAACTTCTCAGGTGGTCAACGGCAACGCTTGGCCATTGCACGCGCTCT
GGCACGCAAGCCTGAGATCTTGATCTTTGATGATTCCTTCTCAGCCCTGGATTACAAAACGGATCGGATCCTTCGCCAAG
CTTTGAAAGAAGAGCTGGCAAATACGACCAGATTGATCGTCGCCCAACGGATTTCGACCATTATGGATGCAGATTTGATC
TTGGTCTTGGATCAAGGGAAGGTCGTTGGTCAAGGAACCCACAAGGAATTGCTTGAGACCAATGAAGTCTATCAAGAAAT
TGCCTATTCTCAATTGTCTAAGGAGGAGTTGGAACATGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-519)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78.833

100

0.788