Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J4854_RS02970 Genome accession   NZ_CP072329
Coordinates   559717..560799 (+) Length   360 a.a.
NCBI ID   WP_200772175.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 554717..565799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS02935 (J4854_02935) - 554725..555027 (-) 303 WP_200772171.1 DUF5960 family protein -
  J4854_RS02940 (J4854_02940) - 555008..555379 (-) 372 WP_200772172.1 hypothetical protein -
  J4854_RS02945 (J4854_02945) - 555376..556788 (-) 1413 WP_200772173.1 Y-family DNA polymerase -
  J4854_RS02950 (J4854_02950) - 556791..557468 (-) 678 WP_200772174.1 helix-turn-helix domain-containing protein -
  J4854_RS02955 (J4854_02955) asnA 557628..558620 (+) 993 WP_187540801.1 aspartate--ammonia ligase -
  J4854_RS02960 (J4854_02960) rsmD 558716..559255 (+) 540 WP_070589649.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J4854_RS02965 (J4854_02965) coaD 559245..559733 (+) 489 WP_187540802.1 pantetheine-phosphate adenylyltransferase -
  J4854_RS02970 (J4854_02970) sepM 559717..560799 (+) 1083 WP_200772175.1 SepM family pheromone-processing serine protease Regulator
  J4854_RS02975 (J4854_02975) - 560862..561251 (+) 390 WP_234700072.1 insulin activator factor -
  J4854_RS02980 (J4854_02980) - 561308..562258 (+) 951 WP_200772176.1 hypothetical protein -
  J4854_RS02985 (J4854_02985) ccdA2 562359..563069 (+) 711 WP_200772177.1 thiol-disulfide oxidoreductase-associated membrane protein CcdA2 -
  J4854_RS02990 (J4854_02990) - 563096..563416 (+) 321 WP_200772178.1 hypothetical protein -
  J4854_RS02995 (J4854_02995) - 563752..564312 (+) 561 WP_200772331.1 redoxin family protein -
  J4854_RS03000 (J4854_03000) msrB 564324..565445 (+) 1122 WP_200772179.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 39001.68 Da        Isoelectric Point: 9.4283

>NTDB_id=552038 J4854_RS02970 WP_200772175.1 559717..560799(+) (sepM) [Streptococcus lactarius strain CCUG 66490]
MTQANKPSLTPKKKKGRLKEYRWPIAGVLFLLLLLAAFVIRLPYYIEMPGTAEDIRTVMTVDGKADTKSGTYDFVTVAVK
EATPADLIYAWATPFTDIYSAKDMTGGSSSQEFTRINQFYMETSQNMAIYQGLKTAGKETQMDFLGVYVMQVADDSTFKG
VLNIADTVTGVNGKTFKSSKELIDYVGSQKIGDPVSVTYIEDGQTKTADGKIIKLTNGKNGIGISLIDRTEAKGDVPVQF
ATAGIGGPSAGMMFSLAIYTQVADPDLRQGRHIAGTGTINQDGTVGDIGGIDKKVVAADKEGAEIFFAPNNPVSKEEKKA
NPKAKSNYETAKDAAKQIHSKMKIVPVKTLQDAIDYLKKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=552038 J4854_RS02970 WP_200772175.1 559717..560799(+) (sepM) [Streptococcus lactarius strain CCUG 66490]
ATGACGCAAGCGAATAAACCAAGCTTGACCCCTAAAAAGAAAAAAGGACGGTTGAAAGAATACCGATGGCCGATTGCAGG
AGTTCTTTTCTTGCTCCTCTTGTTAGCTGCTTTTGTGATTCGCCTTCCCTATTATATTGAGATGCCGGGAACGGCCGAAG
ATATTCGGACAGTGATGACCGTTGATGGGAAAGCGGATACCAAGTCAGGAACCTATGATTTTGTGACCGTAGCAGTGAAA
GAAGCGACTCCAGCTGATTTGATCTATGCCTGGGCAACGCCTTTTACAGACATCTATTCGGCCAAGGATATGACAGGTGG
TAGTTCGAGCCAAGAATTCACGCGGATTAACCAATTCTATATGGAAACCTCGCAAAATATGGCCATCTACCAAGGACTGA
AGACAGCTGGCAAAGAAACCCAGATGGACTTTCTAGGAGTTTACGTCATGCAGGTGGCAGATGACTCGACCTTTAAAGGA
GTCTTGAATATTGCGGATACCGTAACCGGAGTAAATGGCAAGACCTTTAAGAGTTCCAAAGAATTGATTGACTATGTTGG
GTCTCAAAAAATTGGCGATCCCGTTTCGGTCACCTATATCGAGGATGGACAAACCAAGACCGCAGATGGGAAGATCATCA
AATTAACCAACGGGAAAAACGGAATCGGGATTAGCCTGATCGACCGGACGGAAGCCAAAGGCGATGTTCCTGTCCAGTTT
GCGACAGCTGGCATCGGTGGCCCAAGTGCCGGTATGATGTTTAGCCTAGCCATCTACACCCAAGTAGCTGATCCAGATCT
TCGTCAGGGACGCCATATTGCAGGGACAGGAACCATTAACCAAGATGGAACGGTTGGCGATATCGGTGGAATTGACAAGA
AAGTCGTCGCAGCAGATAAAGAAGGAGCAGAAATCTTCTTCGCCCCTAATAACCCAGTTTCTAAAGAAGAAAAGAAAGCC
AATCCAAAGGCCAAATCAAACTACGAAACCGCTAAAGATGCAGCAAAACAAATTCATTCGAAGATGAAAATTGTGCCTGT
CAAAACCCTTCAAGACGCTATTGATTATTTGAAAAAGAAGTAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(246-352)

PDZ domain (PDZ_2)

(145-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.117

94.722

0.569