Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LUV23_RS42585 Genome accession   NZ_CP089536
Coordinates   10503785..10504594 (-) Length   269 a.a.
NCBI ID   WP_206334251.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 10498785..10509594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS42565 (LUV23_42565) - 10500058..10501167 (-) 1110 WP_206334247.1 enolase C-terminal domain-like protein -
  LUV23_RS42570 (LUV23_42570) - 10501183..10501965 (-) 783 WP_206334248.1 creatininase family protein -
  LUV23_RS42575 (LUV23_42575) - 10502060..10502929 (+) 870 WP_232565211.1 ROK family protein -
  LUV23_RS42580 (LUV23_42580) - 10502916..10503788 (-) 873 WP_206334250.1 ATP-binding cassette domain-containing protein -
  LUV23_RS42585 (LUV23_42585) amiE 10503785..10504594 (-) 810 WP_206334251.1 ABC transporter ATP-binding protein Regulator
  LUV23_RS42590 (LUV23_42590) - 10504591..10505427 (-) 837 WP_069874322.1 ABC transporter permease -
  LUV23_RS42595 (LUV23_42595) - 10505424..10506398 (-) 975 WP_069874320.1 ABC transporter permease -
  LUV23_RS42600 (LUV23_42600) - 10506395..10507927 (-) 1533 WP_174886099.1 ABC transporter substrate-binding protein -
  LUV23_RS42605 (LUV23_42605) - 10508023..10508856 (+) 834 WP_100805043.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29023.32 Da        Isoelectric Point: 6.7756

>NTDB_id=552033 LUV23_RS42585 WP_206334251.1 10503785..10504594(-) (amiE) [Streptomyces sp. HNM0561]
MTTHAPVLEIRDLHVDFRLATGTVHAVRGVSLTAHAGETLAVVGESGSGKSATMLAALRLNPEPPCAYPGGEILLDGRDL
LALPEKRLREVRGNDVAMVFQDPMTSLDPLQRVGNQVAEVLRRHRGASRAGARTEAVRALAEVGIPDPELRARQYPHELS
GGLRQRVMIATALVGRPRVLIADEPTTALDVTVQRQILDLLADLRARHGMAVVLVTHDLGVVAETADRVVVMNAGRVVEH
GTVAEVFEAPREQYTRDLLAATPRLEPTS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=552033 LUV23_RS42585 WP_206334251.1 10503785..10504594(-) (amiE) [Streptomyces sp. HNM0561]
ATGACCACACACGCTCCCGTGCTCGAGATCCGCGATCTGCACGTCGACTTCCGGCTCGCCACCGGCACCGTGCACGCCGT
GCGCGGTGTGAGCCTGACGGCACACGCCGGAGAGACCCTGGCCGTCGTCGGCGAATCCGGCAGCGGCAAGTCGGCCACCA
TGCTCGCCGCGCTGCGGCTCAACCCCGAGCCGCCCTGCGCCTACCCGGGCGGCGAGATCCTCCTCGACGGCCGCGACCTG
CTGGCGCTGCCGGAGAAGCGGTTGCGCGAGGTGCGCGGCAACGACGTCGCGATGGTCTTCCAGGACCCGATGACCAGCCT
CGACCCGCTCCAGCGGGTCGGCAACCAGGTGGCCGAGGTGCTGCGCCGGCACCGCGGGGCCTCACGCGCCGGGGCCCGGA
CGGAGGCGGTACGGGCGCTGGCGGAGGTCGGTATCCCGGATCCGGAGCTGCGGGCGCGGCAGTATCCGCACGAGCTGTCC
GGCGGGCTGCGCCAGCGCGTGATGATCGCGACGGCGCTGGTCGGCCGGCCACGGGTGCTCATCGCCGACGAGCCGACCAC
CGCGCTGGACGTCACCGTACAGCGGCAGATCCTGGACCTCCTCGCCGATCTGCGCGCCCGGCACGGTATGGCGGTGGTGC
TGGTCACGCACGACCTCGGGGTGGTCGCGGAGACCGCCGACCGGGTCGTGGTGATGAACGCCGGCCGGGTCGTGGAGCAC
GGCACCGTGGCCGAGGTCTTCGAGGCGCCCCGCGAGCAGTACACCCGCGATCTGCTGGCCGCCACCCCGCGACTGGAGCC
GACATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.529

97.77

0.465
  amiE Streptococcus thermophilus LMG 18311

46.388

97.77

0.454
  amiE Streptococcus thermophilus LMD-9

46.388

97.77

0.454
  oppD Streptococcus mutans UA159

47.082

95.539

0.45