Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LUV23_RS36510 Genome accession   NZ_CP089536
Coordinates   8807208..8808596 (+) Length   462 a.a.
NCBI ID   WP_093705601.1    Uniprot ID   A0A9X2RWP6
Organism   Streptomyces sp. HNM0561     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8802208..8813596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS36485 (LUV23_36485) vraR 8802675..8803295 (-) 621 WP_206333728.1 response regulator transcription factor Regulator
  LUV23_RS36490 (LUV23_36490) - 8803292..8804587 (-) 1296 WP_206333729.1 sensor histidine kinase -
  LUV23_RS36495 (LUV23_36495) - 8804545..8805405 (-) 861 WP_147965155.1 ABC transporter permease -
  LUV23_RS36500 (LUV23_36500) - 8805402..8806274 (-) 873 WP_099017182.1 ABC transporter ATP-binding protein -
  LUV23_RS36505 (LUV23_36505) - 8806460..8807116 (+) 657 WP_206333730.1 vitamin K epoxide reductase family protein -
  LUV23_RS36510 (LUV23_36510) rarA 8807208..8808596 (+) 1389 WP_093705601.1 replication-associated recombination protein A Machinery gene
  LUV23_RS36515 (LUV23_36515) - 8808672..8809436 (-) 765 WP_173963174.1 DUF2470 domain-containing protein -
  LUV23_RS36520 (LUV23_36520) rpsD 8809630..8810241 (+) 612 WP_069869776.1 30S ribosomal protein S4 -
  LUV23_RS36525 (LUV23_36525) - 8810543..8810989 (+) 447 WP_079153530.1 DUF948 domain-containing protein -
  LUV23_RS36530 (LUV23_36530) - 8810998..8811327 (+) 330 WP_069869778.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48849.31 Da        Isoelectric Point: 6.4406

>NTDB_id=552023 LUV23_RS36510 WP_093705601.1 8807208..8808596(+) (rarA) [Streptomyces sp. HNM0561]
MEPDLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRSSGAYGRDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALTDERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAGAGAALDKGEPE
VTLTSLEEAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNAATTAIGAALADVRAGLAGPVPPHLRDGHYQGAKKLGHAQGYLY
PHDLPGGIAAQQYAPDKIHGKRYYEPTRYGAEARYADVVERVRARLRGDPPPSADGQAPASS

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=552023 LUV23_RS36510 WP_093705601.1 8807208..8808596(+) (rarA) [Streptomyces sp. HNM0561]
GTGGAGCCAGACCTGTTCACCGCCGCCGCAGAGGACCGCCAGGAGAAGGACCCCGCCAGCAGCCCGCTGGCCGTGCGGAT
GCGTCCCCGCACCCTTGACGAGGTCGTGGGCCAGCAGCATCTGCTGCGCCCCGGATCCCCGCTCCGGCGGCTCGTGGGCG
AGGGCGGTGGCGGTCCTGCCGGGCCGTCGTCGGTGATCCTCTGGGGCCCGCCGGGCATCGGCAAGACCACGCTGGCGTAC
GTGGTCAGCCAGGCCACCCAGAAGCGGTTCGTCGAGCTGTCGGCCATCACCGCGGGGGTCAAGGAGGTCCGGGCCGTCAT
CGACGGCGCGCGCCGCTCCTCGGGGGCGTACGGGCGGGACACCGTGCTGTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGATTCGCTGCTGCCCGCCGTGGAGAACCGCTGGGTCACACTGATCGCGGCCACCACCGAGAATCCGTACTTC
TCCGTGATCTCCCCGCTGCTCTCCCGTTCGCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGATCTGCGCGGGCTGCT
GCGGCGCGCGCTCACCGACGAGCGCGGCCTCGGCGGGGCCGTCACCCTCCCCGAGGACGCCGAGGCGCATCTGCTGCGCA
TAGCGGGCGGCGACGCCCGGCGGGCGCTCACCGCGCTGGAGGCGGGCGCCGGGGCGGCCCTGGACAAGGGCGAGCCCGAG
GTCACGCTCACCTCCCTGGAGGAGGCGGTCGACCGGGCCGCGGTGAAGTACGACCGGGCCGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGCCGGCTGATGATCTCGGCGAGCGAGGACATCGGCCTGGCCGATCCGACCGCCCTG
CCCACCGCGGTGGCGGCGGCGCAGGCGGTCGCCCTGATCGGCTTCCCGGAGGCCGCGCTCACCCTGAGCCACGCCACCAT
CGCCCTGGCGCTCGCGCCCAAGTCCAACGCCGCGACCACGGCGATCGGCGCGGCGCTCGCGGATGTGCGGGCGGGTCTCG
CCGGACCGGTGCCGCCGCATCTGCGCGACGGCCACTACCAGGGCGCCAAGAAGCTCGGCCACGCACAGGGCTATCTCTAT
CCGCACGATCTGCCGGGCGGTATCGCGGCGCAGCAGTACGCACCGGACAAGATCCACGGCAAGCGGTACTACGAGCCCAC
GCGGTACGGGGCCGAGGCGCGGTACGCGGATGTGGTGGAGCGGGTCCGGGCGCGGCTGCGGGGCGACCCGCCGCCGTCCG
CCGACGGCCAGGCCCCGGCCTCGTCGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X2RWP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.651

93.074

0.416