Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LUV23_RS12660 Genome accession   NZ_CP089536
Coordinates   3236352..3238430 (+) Length   692 a.a.
NCBI ID   WP_206332060.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3231352..3243430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS12635 (LUV23_12635) - 3231512..3232285 (+) 774 WP_174886022.1 ABC transporter permease -
  LUV23_RS12640 (LUV23_12640) - 3232390..3233382 (+) 993 WP_079257208.1 COX15/CtaA family protein -
  LUV23_RS12645 (LUV23_12645) - 3233352..3234404 (-) 1053 WP_079260403.1 amidohydrolase -
  LUV23_RS12650 (LUV23_12650) - 3234574..3234993 (-) 420 WP_231981499.1 hypothetical protein -
  LUV23_RS12655 (LUV23_12655) - 3235018..3235968 (-) 951 WP_069869960.1 heme o synthase -
  LUV23_RS12660 (LUV23_12660) recP/tkt 3236352..3238430 (+) 2079 WP_206332060.1 transketolase Machinery gene
  LUV23_RS12665 (LUV23_12665) tal 3238476..3239594 (+) 1119 WP_206332061.1 transaldolase -
  LUV23_RS12670 (LUV23_12670) zwf 3239591..3241123 (+) 1533 WP_069869963.1 glucose-6-phosphate dehydrogenase -
  LUV23_RS12675 (LUV23_12675) opcA 3241120..3242271 (+) 1152 WP_206332062.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  LUV23_RS12680 (LUV23_12680) pgl 3242268..3243050 (+) 783 WP_069869965.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74610.48 Da        Isoelectric Point: 5.3054

>NTDB_id=551958 LUV23_RS12660 WP_206332060.1 3236352..3238430(+) (recP/tkt) [Streptomyces sp. HNM0561]
MSTKPTTTDLEWTDLDRRAVDTARVLAMDSVQKVGNGHPGTAMSLAPAAYLLFQKLMRHDPSDAGWTGRDRFVLSPGHTS
LTLYVQLYLAGFGLELDDLRSFRTWGSKTPGHPEHGHTTGVETTTGPLGQGIANAVGMAMAARYERGLFDPEAPQGASPF
DHTIWAIVSDGDLEEGISAEASSLAGHQRLGNIVALYDDNHISIEGDTATALSEDVLGRYEAYGWHVQRIEQSENGDFDI
HALYTALKAAQAETERPSIIAARTIIAWPAPNAQNTEASHGSALGADEVAATKRVLGFDPEQHFAVDTDVINHTRALVER
GREAHAAWDKRLQEWRNTSPERAALFDRITAGELPEGWEGVLPVFEPGKDVATRKASGQVLKALGGVLPELWGGSADLAG
SNNTTIDASSSFLPKGNPLPEADPYGRTIHFGIREHAMGSAMNGIALHGNTRVYGGTFLVFSDYMRPAVRLAALMKLPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNVVRPADANETAIAWREITRRHGANPAPHGLALTRQNVPTYEADENAA
KGGYVLFEAEGGTPRVILIGTGSEVQLAVEARERLQAAGVPTRVVSMPSVEWFEEQDKGYRESVLPPSVKARVAVEAGIG
LTWYRYVGEAGRIVSLEHFGASADYKVLFREFGLTAEAVVTAARESLDAAGR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=551958 LUV23_RS12660 WP_206332060.1 3236352..3238430(+) (recP/tkt) [Streptomyces sp. HNM0561]
GTGAGCACCAAGCCGACTACCACAGACCTCGAGTGGACCGATCTGGACCGGCGGGCCGTCGATACGGCTCGTGTCCTGGC
CATGGATTCCGTGCAGAAGGTCGGTAACGGCCACCCTGGCACGGCCATGAGCCTCGCACCGGCCGCGTACCTGCTATTCC
AGAAGCTGATGCGGCACGACCCCTCCGACGCCGGCTGGACCGGCCGCGACCGCTTCGTGCTGTCCCCCGGGCACACCAGC
CTGACCCTCTACGTCCAGCTGTACCTGGCGGGCTTCGGGCTGGAGCTCGATGATCTGCGGTCGTTCCGCACCTGGGGCAG
CAAGACCCCGGGCCACCCGGAGCACGGCCACACCACCGGTGTCGAGACCACCACCGGCCCCCTGGGCCAGGGCATCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCGCCGCAGGGCGCCTCTCCGTTC
GACCACACCATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCATCTCCGCCGAGGCGTCCTCGCTCGCCGGCCA
CCAGCGGCTGGGCAATATCGTCGCCCTGTACGACGACAACCACATCTCGATCGAGGGCGACACCGCGACCGCGCTCTCCG
AGGATGTCCTGGGGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCATCGAGCAGTCCGAGAACGGCGACTTCGACATC
CACGCGCTGTACACGGCGCTCAAGGCGGCGCAGGCCGAGACCGAGCGCCCCTCGATCATCGCGGCCCGTACGATCATCGC
CTGGCCCGCGCCGAACGCGCAGAACACCGAGGCGTCCCACGGCTCGGCGCTCGGCGCCGACGAGGTCGCCGCCACCAAGC
GCGTCCTCGGCTTCGACCCCGAGCAGCACTTCGCGGTCGACACCGACGTGATCAACCACACCCGCGCCCTGGTCGAGCGC
GGCCGCGAGGCGCACGCCGCCTGGGACAAGAGGCTCCAGGAGTGGCGGAACACCAGCCCCGAGCGGGCCGCCCTGTTCGA
CCGGATCACCGCGGGCGAGCTGCCCGAGGGCTGGGAGGGCGTGCTGCCGGTCTTCGAGCCGGGCAAGGACGTGGCCACCC
GTAAGGCGTCCGGCCAGGTGCTCAAGGCGCTCGGCGGGGTGCTCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCCAACAACACCACGATCGACGCGTCCTCGTCCTTCCTCCCGAAGGGCAACCCGCTGCCGGAGGCCGACCCCTACGGCCG
CACCATCCACTTCGGCATCCGCGAGCACGCCATGGGCTCGGCCATGAACGGCATCGCGCTGCACGGCAACACCCGTGTCT
ACGGCGGTACCTTCCTGGTCTTCTCCGACTACATGCGCCCGGCGGTCCGGCTGGCCGCGCTGATGAAGCTGCCGGTCACC
TATGTGTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCGGCGCTGCG
CGCCATCCCGGGCCTGAACGTCGTCCGCCCCGCCGACGCCAACGAGACGGCCATCGCCTGGCGGGAGATCACCCGCCGCC
ATGGCGCGAACCCCGCCCCGCACGGTCTGGCGCTGACCCGGCAGAACGTGCCGACCTACGAGGCCGACGAGAACGCCGCC
AAGGGCGGCTATGTGCTCTTCGAGGCCGAGGGCGGCACGCCGCGGGTCATCCTCATCGGCACCGGTTCGGAGGTGCAGCT
CGCCGTCGAGGCGCGGGAGCGGCTCCAGGCCGCCGGGGTTCCCACCCGCGTCGTGTCGATGCCCTCGGTCGAGTGGTTCG
AGGAGCAGGACAAGGGGTACCGGGAGAGCGTGCTGCCGCCTTCCGTCAAGGCCCGCGTGGCCGTCGAGGCGGGGATCGGT
CTGACCTGGTACCGCTACGTCGGCGAGGCCGGCCGCATCGTCTCGCTGGAGCACTTCGGCGCCTCCGCCGACTACAAGGT
GCTCTTCCGGGAGTTCGGCCTCACCGCCGAGGCCGTGGTCACCGCCGCCCGCGAGTCCCTCGACGCCGCGGGGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(573-679)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.741

97.543

0.436