Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   J6598_RS01605 Genome accession   NZ_CP072325
Coordinates   335220..336659 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain 183026     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330220..341659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6598_RS01575 (J6598_01575) mlaF 330797..331597 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  J6598_RS01580 (J6598_01580) - 331805..332800 (+) 996 WP_005336342.1 KpsF/GutQ family sugar-phosphate isomerase -
  J6598_RS01585 (J6598_01585) kdsC 332800..333354 (+) 555 WP_047438734.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  J6598_RS01590 (J6598_01590) lptC 333351..333911 (+) 561 WP_227272904.1 LPS export ABC transporter periplasmic protein LptC -
  J6598_RS01595 (J6598_01595) lptA 333898..334425 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  J6598_RS01600 (J6598_01600) lptB 334429..335154 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  J6598_RS01605 (J6598_01605) rpoN/rpoN1 335220..336659 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  J6598_RS01610 (J6598_01610) hpf 336680..336967 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  J6598_RS01615 (J6598_01615) ptsN 336970..337416 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J6598_RS01620 (J6598_01620) rapZ 337462..338328 (+) 867 WP_245095683.1 RNase adapter RapZ -
  J6598_RS01625 (J6598_01625) npr 338349..338621 (+) 273 WP_231720003.1 PTS phosphocarrier protein NPr -
  J6598_RS01630 (J6598_01630) degS 338813..339937 (-) 1125 WP_005336297.1 outer membrane-stress sensor serine endopeptidase DegS -
  J6598_RS01635 (J6598_01635) - 340047..341408 (-) 1362 WP_005336295.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=551957 J6598_RS01605 WP_005336331.1 335220..336659(+) (rpoN/rpoN1) [Aeromonas veronii strain 183026]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=551957 J6598_RS01605 WP_005336331.1 335220..336659(+) (rpoN/rpoN1) [Aeromonas veronii strain 183026]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACAACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGACTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCAGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAGCTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTCATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCAGCCCCCCGCATTCGGGTCAACGAGACCTACGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491