Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6247_RS05855 Genome accession   NZ_CP072322
Coordinates   1190465..1191094 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC-JS426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185465..1196094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6247_RS05840 (J6247_05835) helD 1185707..1187761 (-) 2055 WP_001297106.1 DNA helicase IV -
  J6247_RS05845 (J6247_05840) yccF 1187884..1188330 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6247_RS05850 (J6247_05845) yccS 1188340..1190502 (+) 2163 WP_000875015.1 YccS family putative transporter -
  J6247_RS05855 (J6247_05850) sxy/tfoX 1190465..1191094 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6247_RS05860 (J6247_05855) sulA 1191313..1191822 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6247_RS05865 (J6247_05860) ompA 1192179..1193231 (+) 1053 WP_000750419.1 porin OmpA -
  J6247_RS05870 (J6247_05865) matP 1193307..1193759 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  J6247_RS05875 (J6247_05870) ycbZ 1193945..1195705 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=551937 J6247_RS05855 WP_000839153.1 1190465..1191094(-) (sxy/tfoX) [Escherichia coli strain EC-JS426]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=551937 J6247_RS05855 WP_000839153.1 1190465..1191094(-) (sxy/tfoX) [Escherichia coli strain EC-JS426]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1