Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J6B42_RS19655 Genome accession   NZ_CP072311
Coordinates   3945793..3946311 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain SC60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3940793..3951311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B42_RS19625 (J6B42_19560) - 3941994..3942374 (-) 381 WP_004392999.1 VOC family protein -
  J6B42_RS19630 (J6B42_19565) - 3942430..3943368 (-) 939 WP_032858562.1 LacI family DNA-binding transcriptional regulator -
  J6B42_RS19635 (J6B42_19570) xth 3943431..3944189 (-) 759 WP_025854040.1 exodeoxyribonuclease III -
  J6B42_RS19640 (J6B42_19575) - 3944186..3944743 (-) 558 WP_025854039.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  J6B42_RS19645 (J6B42_19580) - 3944740..3945321 (-) 582 WP_025854038.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  J6B42_RS19650 (J6B42_19585) rpsR 3945510..3945749 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  J6B42_RS19655 (J6B42_19590) ssbA 3945793..3946311 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  J6B42_RS19660 (J6B42_19595) rpsF 3946351..3946638 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  J6B42_RS19665 (J6B42_19600) ychF 3946750..3947850 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  J6B42_RS19670 (J6B42_19605) - 3947977..3949980 (-) 2004 WP_025854037.1 molybdopterin-dependent oxidoreductase -
  J6B42_RS19675 (J6B42_19610) - 3950027..3950233 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=551933 J6B42_RS19655 WP_004392979.1 3945793..3946311(-) (ssbA) [Bacillus velezensis strain SC60]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=551933 J6B42_RS19655 WP_004392979.1 3945793..3946311(-) (ssbA) [Bacillus velezensis strain SC60]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTCCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378