Detailed information NTG0551930

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: J6B42_RS17970
• Genome accession: NZ_CP072311
• Coordinates: 3611204..3612349 (+)
• Length: 381 a.a.
• NCBI ID: WP_081364451.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SC60
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3606204..3617349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6B42_RS17950 (J6B42_17885)	-	3606678..3607394 (-)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-
J6B42_RS17955 (J6B42_17890)	narK	3607492..3608682 (-)	1191	WP_025853600.1	nitrate transporter NarK	-
J6B42_RS17960 (J6B42_17895)	argS	3608817..3610487 (-)	1671	WP_025853601.1	arginine--tRNA ligase	-
J6B42_RS17965 (J6B42_17900)	-	3610484..3610912 (-)	429	WP_003151069.1	DUF1934 family protein	-
J6B42_RS17970 (J6B42_17905)	rapF	3611204..3612349 (+)	1146	WP_081364451.1	Rap family tetratricopeptide repeat protein	Regulator
J6B42_RS17975 (J6B42_17910)	-	3612333..3612452 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
J6B42_RS17980 (J6B42_17915)	speB	3612575..3613012 (-)	438	Protein_3494	agmatinase	-
J6B42_RS17985 (J6B42_17920)	-	3613174..3614601 (-)	1428	WP_071543386.1	DUF885 family protein	-
J6B42_RS17990 (J6B42_17925)	-	3614602..3615942 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
J6B42_RS17995 (J6B42_17930)	-	3615939..3616994 (-)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0694

>NTDB_id=551930 J6B42_RS17970 WP_081364451.1 3611204..3612349(+) (rapF) [Bacillus velezensis strain SC60]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=551930 J6B42_RS17970 WP_081364451.1 3611204..3612349(+) (rapF) [Bacillus velezensis strain SC60]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGATTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCACCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53