Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LUA14_RS16980 Genome accession   NZ_CP089530
Coordinates   3356083..3357213 (-) Length   376 a.a.
NCBI ID   WP_099567065.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351083..3362213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS16960 (LUA14_16960) - 3351187..3352038 (-) 852 WP_014305754.1 DUF72 domain-containing protein -
  LUA14_RS16965 (LUA14_16965) - 3352065..3352418 (-) 354 WP_015240516.1 hypothetical protein -
  LUA14_RS16970 (LUA14_16970) - 3352491..3353855 (-) 1365 WP_218791354.1 allantoinase -
  LUA14_RS16975 (LUA14_16975) - 3354035..3355630 (+) 1596 WP_218791355.1 PucR family transcriptional regulator -
  LUA14_RS16980 (LUA14_16980) rapC 3356083..3357213 (-) 1131 WP_099567065.1 Rap family tetratricopeptide repeat protein Regulator
  LUA14_RS16990 (LUA14_16990) - 3357654..3358787 (-) 1134 WP_124692746.1 hypothetical protein -
  LUA14_RS16995 (LUA14_16995) - 3358844..3360040 (-) 1197 WP_052827813.1 MFS transporter -
  LUA14_RS17000 (LUA14_17000) - 3360162..3361373 (-) 1212 WP_371136943.1 pyridoxal-phosphate-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44373.79 Da        Isoelectric Point: 6.5803

>NTDB_id=551913 LUA14_RS16980 WP_099567065.1 3356083..3357213(-) (rapC) [Bacillus amyloliquefaciens strain LS1-002-014s]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVVSGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQIGIKKT
IDYLEKHKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=551913 LUA14_RS16980 WP_099567065.1 3356083..3357213(-) (rapC) [Bacillus amyloliquefaciens strain LS1-002-014s]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAATATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGTTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCTATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCGTATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCACATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATAGGAATCAAAAAAACA
ATTGATTACCTTGAGAAACATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.386

100

0.436
  rapF Bacillus subtilis subsp. subtilis str. 168

40.369

100

0.407