Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J6B42_RS07195 Genome accession   NZ_CP072311
Coordinates   1361866..1362150 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SC60     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356866..1367150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B42_RS07175 (J6B42_07115) - 1358113..1359021 (+) 909 WP_025851471.1 ketopantoate reductase family protein -
  J6B42_RS07180 (J6B42_07120) - 1359051..1360283 (-) 1233 WP_025851469.1 aminopeptidase -
  J6B42_RS07185 (J6B42_07125) - 1360384..1360518 (-) 135 WP_003154559.1 protein YkpC -
  J6B42_RS07190 (J6B42_07130) mreBH 1360590..1361597 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  J6B42_RS07195 (J6B42_07135) abrB 1361866..1362150 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J6B42_RS07200 (J6B42_07140) - 1362323..1363627 (+) 1305 WP_014304932.1 ATP-binding protein -
  J6B42_RS07205 (J6B42_07145) - 1363629..1364456 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase family protein -
  J6B42_RS07210 (J6B42_07150) ktrC 1364497..1365162 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  J6B42_RS07215 (J6B42_07155) ade 1365311..1367044 (+) 1734 WP_025851460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=551889 J6B42_RS07195 WP_024085249.1 1361866..1362150(+) (abrB) [Bacillus velezensis strain SC60]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=551889 J6B42_RS07195 WP_024085249.1 1361866..1362150(+) (abrB) [Bacillus velezensis strain SC60]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543