Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   LUA14_RS12655 Genome accession   NZ_CP089530
Coordinates   2495374..2496864 (-) Length   496 a.a.
NCBI ID   WP_122504099.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2490374..2501864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS12625 (LUA14_12625) gudB 2490439..2491713 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  LUA14_RS12630 (LUA14_12630) - 2491874..2492458 (-) 585 WP_003153412.1 genetic competence negative regulator -
  LUA14_RS12635 (LUA14_12635) - 2492610..2493398 (-) 789 WP_020956008.1 metallophosphoesterase -
  LUA14_RS12640 (LUA14_12640) - 2493485..2493943 (-) 459 WP_007409443.1 YpbF family protein -
  LUA14_RS12645 (LUA14_12645) - 2494012..2494794 (-) 783 WP_069007647.1 LysM peptidoglycan-binding domain-containing protein -
  LUA14_RS12650 (LUA14_12650) - 2494772..2495359 (-) 588 WP_015240111.1 CPBP family intramembrane glutamic endopeptidase -
  LUA14_RS12655 (LUA14_12655) recS 2495374..2496864 (-) 1491 WP_122504099.1 RecQ family ATP-dependent DNA helicase Machinery gene
  LUA14_RS12660 (LUA14_12660) - 2496857..2497915 (-) 1059 WP_032870103.1 helix-turn-helix domain-containing protein -
  LUA14_RS12665 (LUA14_12665) - 2498184..2498432 (+) 249 WP_003153403.1 ferredoxin -
  LUA14_RS12670 (LUA14_12670) - 2498573..2499145 (-) 573 WP_083673820.1 ECF transporter S component -
  LUA14_RS12675 (LUA14_12675) serA 2499634..2501211 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55985.01 Da        Isoelectric Point: 6.2484

>NTDB_id=551876 LUA14_RS12655 WP_122504099.1 2495374..2496864(-) (recS) [Bacillus amyloliquefaciens strain LS1-002-014s]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTVAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=551876 LUA14_RS12655 WP_122504099.1 2495374..2496864(-) (recS) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGGTCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683