Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LUA14_RS12290 Genome accession   NZ_CP089530
Coordinates   2427891..2428499 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A7Z5Y2
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2422891..2433499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS12250 (LUA14_12250) - 2423944..2424450 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LUA14_RS12255 (LUA14_12255) - 2424589..2425002 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  LUA14_RS12260 (LUA14_12260) - 2425032..2425466 (-) 435 WP_025284916.1 YppG family protein -
  LUA14_RS12265 (LUA14_12265) - 2425653..2425835 (+) 183 WP_003153532.1 YppF family protein -
  LUA14_RS12270 (LUA14_12270) - 2425874..2426242 (-) 369 WP_098081526.1 YppE family protein -
  LUA14_RS12275 (LUA14_12275) - 2426288..2426533 (-) 246 WP_015240083.1 DUF5446 family protein -
  LUA14_RS12280 (LUA14_12280) sspM 2426739..2426843 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LUA14_RS12285 (LUA14_12285) - 2426887..2427849 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  LUA14_RS12290 (LUA14_12290) recU 2427891..2428499 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  LUA14_RS12295 (LUA14_12295) - 2428538..2431321 (+) 2784 WP_218791275.1 PBP1A family penicillin-binding protein -
  LUA14_RS12300 (LUA14_12300) - 2431399..2431890 (-) 492 WP_032870046.1 YpoC family protein -
  LUA14_RS12305 (LUA14_12305) nth 2431887..2432546 (-) 660 WP_007612187.1 endonuclease III -
  LUA14_RS12310 (LUA14_12310) dnaD 2432565..2433263 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=551874 LUA14_RS12290 WP_012117837.1 2427891..2428499(+) (recU) [Bacillus amyloliquefaciens strain LS1-002-014s]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=551874 LUA14_RS12290 WP_012117837.1 2427891..2428499(+) (recU) [Bacillus amyloliquefaciens strain LS1-002-014s]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z5Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891